Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_00771 and EFB2_00772 are separated by 5 nucleotidesEFB2_00772 and EFB2_00773 are separated by 147 nucleotidesEFB2_00773 and EFB2_00774 are separated by 204 nucleotidesEFB2_00774 and EFB2_00775 are separated by 0 nucleotides EFB2_00771: EFB2_00771 - Putative acid--amine ligase YgiC, at 784,935 to 786,095 _00771 EFB2_00772: EFB2_00772 - hypothetical protein, at 786,101 to 786,772 _00772 EFB2_00773: EFB2_00773 - Outer membrane protein TolC, at 786,920 to 788,401 _00773 EFB2_00774: EFB2_00774 - ADP-ribose pyrophosphatase, at 788,606 to 789,235 _00774 EFB2_00775: EFB2_00775 - hypothetical protein, at 789,236 to 789,658 _00775
Group Condition EFB2_00771 EFB2_00772 EFB2_00773 EFB2_00774 EFB2_00775
no phage control BHIS_CaCl2 no phage control -0.6 -0.0 -3.5 +0.2 -0.5
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.0 -0.3 -3.6 +0.0 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.2 -0.0 -3.5 -0.1 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.0 -0.3 -3.4 +0.0 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 -0.1 -3.7 +0.0 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 -0.2 -3.6 +0.1 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.0 -0.1 -3.6 +0.2 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae +0.1 -0.2 -3.6 +0.0 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.2 +0.1 -3.4 +0.0 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 +0.1 -3.5 -0.1 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.0 -0.2 -3.4 +0.0 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -0.1 -0.0 -3.5 +0.2 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -0.0 -0.1 -3.5 +0.1 +0.1
no phage control BHIS_CaCl2 no phage control -0.0 -0.1 -3.3 -0.1 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -0.0 +0.1 -3.7 +0.2 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.2 +0.2 -3.3 -0.1 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae -0.0 -0.2 -3.3 +0.4 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 +0.1 -3.7 +0.0 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.2 -0.1 -3.4 -0.1 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -0.0 -0.1 -3.3 +0.2 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.2 -0.1 -3.4 -0.1 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.0 -0.1 -3.4 +0.2 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -0.2 +0.1 -3.2 +0.1 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 -0.3 -3.1 +0.2 +0.1
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae -0.1 +0.2 -3.1 +0.2 -0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 +0.2 -3.4 +0.1 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 +0.2 -3.2 +0.1 -0.2
no phage control BHIS no phage control +0.1 +0.3 -3.3 +0.2 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 +0.2 -3.2 +0.3 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 +0.1 -3.0 +0.4 -0.1
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