Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_00738 and EFB2_00739 are separated by 507 nucleotidesEFB2_00739 and EFB2_00740 are separated by 104 nucleotidesEFB2_00740 and EFB2_00741 are separated by 287 nucleotidesEFB2_00741 and EFB2_00742 are separated by 53 nucleotides EFB2_00738: EFB2_00738 - Putrescine aminotransferase, at 749,072 to 750,361 _00738 EFB2_00739: EFB2_00739 - Aerotaxis receptor, at 750,869 to 752,389 _00739 EFB2_00740: EFB2_00740 - Transcriptional regulator YqjI, at 752,494 to 753,117 _00740 EFB2_00741: EFB2_00741 - NADPH-dependent ferric-chelate reductase, at 753,405 to 754,169 _00741 EFB2_00742: EFB2_00742 - tRNA-Met, at 754,223 to 754,298 _00742
Group Condition EFB2_00738 EFB2_00739 EFB2_00740 EFB2_00741 EFB2_00742
no phage control BHIS_CaCl2 no phage control -0.0 -0.0 -1.3 +0.4 N.D.
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 -0.0 -0.4 -0.1 N.D.
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.0 +0.0 -0.5 -0.1 N.D.
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.0 +0.0 -0.3 -0.1 N.D.
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.2 -0.0 -0.2 -0.0 N.D.
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 -0.1 -0.2 -0.1 N.D.
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 -0.0 -0.2 -0.0 N.D.
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 -0.0 -0.3 -0.1 N.D.
no phage control BHIS_CaCl2 no phage control +0.0 +0.1 -0.4 +0.0 N.D.
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 -0.0 -0.3 -0.0 N.D.
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.2 +0.0 +0.2 -0.1 N.D.
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 -0.0 +0.3 -0.1 N.D.
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -0.1 +0.1 +0.2 -0.1 N.D.
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 -0.0 +0.2 +0.1 N.D.
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.0 -0.1 +0.2 +0.1 N.D.
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.0 -0.1 +0.4 -0.1 N.D.
no phage control BHIS no phage control -0.0 -0.0 +0.2 +0.1 N.D.
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI -0.1 -0.0 +0.2 +0.1 N.D.
mixed community no phage control BHIS no phage control with 14 member community +0.0 -0.0 +0.2 +0.1 N.D.
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.0 -0.0 +0.4 -0.1 N.D.
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae +0.0 -0.1 +0.3 +0.1 N.D.
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.0 -0.0 +0.4 -0.0 N.D.
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae -0.0 +0.0 +0.3 +0.1 N.D.
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 -0.0 +0.3 +0.1 N.D.
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 +0.1 +0.2 +0.1 N.D.
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 -0.0 +0.4 +0.1 N.D.
mixed community no phage control BHIS no phage control with 14 member community +0.1 +0.0 +0.2 +0.1 N.D.
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 -0.0 +0.5 -0.0 N.D.
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.0 +0.0 +0.6 -0.1 N.D.
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.0 +0.0 +0.6 +0.0 N.D.
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