Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_00728 and EFB2_00729 are separated by 270 nucleotidesEFB2_00729 and EFB2_00730 are separated by 44 nucleotidesEFB2_00730 and EFB2_00731 are separated by 225 nucleotidesEFB2_00731 and EFB2_00732 are separated by 16 nucleotides EFB2_00728: EFB2_00728 - Ribosomal RNA large subunit methyltransferase G, at 734,594 to 735,730 _00728 EFB2_00729: EFB2_00729 - Antitoxin HigA, at 736,001 to 736,417 _00729 EFB2_00730: EFB2_00730 - 2,4-dienoyl-CoA reductase, at 736,462 to 738,480 _00730 EFB2_00731: EFB2_00731 - Glucosidase YgjK, at 738,706 to 741,057 _00731 EFB2_00732: EFB2_00732 - hypothetical protein, at 741,074 to 742,144 _00732
Group Condition EFB2_00728 EFB2_00729 EFB2_00730 EFB2_00731 EFB2_00732
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.2 -0.3 +0.0 -0.0 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.0 -0.2 -0.0 -0.1 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.0 -0.0 -0.2 +0.0 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.0 -0.2 -0.1 -0.0 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 -0.1 +0.1 +0.1 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -0.0 -0.1 +0.1 +0.0 -0.1
no phage control BHIS_CaCl2 no phage control +0.2 -0.1 +0.0 -0.1 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 -0.1 -0.0 +0.0 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 -0.1 +0.0 -0.0 -0.1
no phage control BHIS no phage control -0.0 -0.2 +0.1 +0.0 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 -0.0 +0.0 -0.0 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 -0.1 -0.0 +0.0 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -0.0 -0.1 +0.1 +0.0 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -0.0 -0.1 +0.1 +0.1 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -0.1 -0.0 +0.1 +0.1 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 +0.0 -0.0 +0.1 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.0 -0.1 +0.1 -0.0 -0.0
no phage control BHIS no phage control -0.1 +0.0 +0.1 +0.0 +0.0
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.1 -0.0 -0.1 +0.0 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 -0.0 +0.1 -0.0 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 -0.0 +0.1 +0.1 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae +0.1 +0.1 +0.1 -0.0 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -0.1 +0.1 +0.1 +0.1 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.0 +0.1 +0.1 -0.1 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 +0.2 +0.1 -0.1 +0.0
no phage control BHIS_CaCl2 no phage control +0.1 -0.0 +0.1 +0.0 +0.1
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI -0.0 +0.1 +0.0 +0.0 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.0 -0.0 +0.1 +0.1 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 +0.1 +0.1 -0.0 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 +0.1 +0.0 +0.1 +0.1
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