Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_00643 and EFB2_00644 are separated by 125 nucleotidesEFB2_00644 and EFB2_00645 are separated by 90 nucleotidesEFB2_00645 and EFB2_00646 are separated by 89 nucleotidesEFB2_00646 and EFB2_00647 overlap by 8 nucleotides EFB2_00643: EFB2_00643 - RNA-binding protein YhbY, at 649,159 to 649,452 _00643 EFB2_00644: EFB2_00644 - Ribosomal RNA large subunit methyltransferase E, at 649,578 to 650,207 _00644 EFB2_00645: EFB2_00645 - ATP-dependent zinc metalloprotease FtsH, at 650,298 to 652,241 _00645 EFB2_00646: EFB2_00646 - Dihydropteroate synthase, at 652,331 to 653,179 _00646 EFB2_00647: EFB2_00647 - Phosphoglucosamine mutase, at 653,172 to 654,509 _00647
Group Condition EFB2_00643 EFB2_00644 EFB2_00645 EFB2_00646 EFB2_00647
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.7 N.D. N.D. N.D. N.D.
mixed community no phage control BHIS no phage control with 14 member community -0.7 N.D. N.D. N.D. N.D.
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.7 N.D. N.D. N.D. N.D.
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae -0.7 N.D. N.D. N.D. N.D.
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.7 N.D. N.D. N.D. N.D.
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.6 N.D. N.D. N.D. N.D.
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -0.6 N.D. N.D. N.D. N.D.
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.5 N.D. N.D. N.D. N.D.
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -0.5 N.D. N.D. N.D. N.D.
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.5 N.D. N.D. N.D. N.D.
no phage control BHIS no phage control -0.5 N.D. N.D. N.D. N.D.
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae -0.5 N.D. N.D. N.D. N.D.
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.5 N.D. N.D. N.D. N.D.
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae -0.5 N.D. N.D. N.D. N.D.
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI -0.4 N.D. N.D. N.D. N.D.
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.4 N.D. N.D. N.D. N.D.
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.4 N.D. N.D. N.D. N.D.
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.4 N.D. N.D. N.D. N.D.
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae -0.4 N.D. N.D. N.D. N.D.
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae -0.4 N.D. N.D. N.D. N.D.
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -0.4 N.D. N.D. N.D. N.D.
mixed community no phage control BHIS no phage control with 14 member community -0.4 N.D. N.D. N.D. N.D.
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.4 N.D. N.D. N.D. N.D.
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.4 N.D. N.D. N.D. N.D.
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.4 N.D. N.D. N.D. N.D.
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -0.4 N.D. N.D. N.D. N.D.
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae -0.4 N.D. N.D. N.D. N.D.
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -0.4 N.D. N.D. N.D. N.D.
no phage control BHIS no phage control -0.4 N.D. N.D. N.D. N.D.
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -0.3 N.D. N.D. N.D. N.D.
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