Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_00613 and EFB2_00614 are separated by 229 nucleotidesEFB2_00614 and EFB2_00615 overlap by 4 nucleotidesEFB2_00615 and EFB2_00616 overlap by 4 nucleotidesEFB2_00616 and EFB2_00617 are separated by 212 nucleotides EFB2_00613: EFB2_00613 - Aerobic respiration control sensor protein ArcB, at 624,356 to 626,692 _00613 EFB2_00614: EFB2_00614 - Glyoxalase ElbB, at 626,922 to 627,575 _00614 EFB2_00615: EFB2_00615 - Biosynthetic peptidoglycan transglycosylase, at 627,572 to 628,300 _00615 EFB2_00616: EFB2_00616 - putative protein YrbL, at 628,297 to 628,929 _00616 EFB2_00617: EFB2_00617 - Phosphocarrier protein NPr, at 629,142 to 629,414 _00617
Group Condition EFB2_00613 EFB2_00614 EFB2_00615 EFB2_00616 EFB2_00617
mixed community no phage control BHIS no phage control with 14 member community -2.1 +0.0 -0.2 -0.2 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -2.5 +0.1 +0.0 +0.1 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -2.3 -0.1 -0.1 -0.2 +0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -2.3 +0.1 -0.1 +0.0 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -1.9 +0.0 -0.2 -0.2 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -2.4 -0.1 -0.0 +0.2 +0.1
no phage control BHIS no phage control -1.9 -0.0 -0.1 -0.2 -0.1
no phage control BHIS_CaCl2 no phage control -0.9 +0.2 +0.0 -1.9 +0.3
mixed community no phage control BHIS no phage control with 14 member community -1.8 +0.0 -0.0 -0.2 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae -1.8 +0.0 +0.0 -0.2 -0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -2.0 +0.0 -0.2 +0.0 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -1.9 -0.0 -0.1 -0.1 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -1.6 +0.0 -0.0 -0.2 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -2.1 -0.0 +0.2 -0.2 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -1.5 +0.0 +0.0 +0.1 -0.7
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -1.7 +0.0 -0.1 -0.2 -0.1
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI -1.8 +0.1 +0.0 -0.0 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -1.9 +0.0 +0.0 +0.0 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -1.6 -0.1 +0.1 -0.3 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -1.6 +0.1 -0.1 -0.4 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -2.1 +0.1 +0.1 -0.0 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -2.2 +0.0 +0.2 +0.1 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -1.8 +0.1 -0.0 -0.1 +0.1
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI -1.7 +0.1 +0.1 -0.2 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -1.8 +0.1 -0.1 +0.0 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -1.8 +0.0 +0.1 -0.1 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -1.7 +0.0 -0.0 +0.2 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -1.9 +0.1 +0.3 +0.0 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -1.8 +0.1 -0.1 +0.1 +0.3
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -1.6 -0.0 +0.2 -0.1 +0.1
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EFB2_00613
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