Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_00593 and EFB2_00594 are separated by 434 nucleotidesEFB2_00594 and EFB2_00595 are separated by 62 nucleotidesEFB2_00595 and EFB2_00596 are separated by 89 nucleotidesEFB2_00596 and EFB2_00597 are separated by 153 nucleotides EFB2_00593: EFB2_00593 - Arginine repressor, at 600,927 to 601,397 _00593 EFB2_00594: EFB2_00594 - Malate dehydrogenase, at 601,832 to 602,770 _00594 EFB2_00595: EFB2_00595 - Serine endoprotease DegS, at 602,833 to 603,900 _00595 EFB2_00596: EFB2_00596 - Periplasmic pH-dependent serine endoprotease DegQ, at 603,990 to 605,357 _00596 EFB2_00597: EFB2_00597 - Inner membrane protein YhcB, at 605,511 to 605,909 _00597
Group Condition EFB2_00593 EFB2_00594 EFB2_00595 EFB2_00596 EFB2_00597
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae -0.6 -0.6 -0.4 +0.2 -0.4
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.6 -0.6 -0.2 +0.1 -0.6
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.4 -0.3 -0.2 +0.1 -0.9
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.8 -0.6 +0.0 +0.2 -0.4
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.4 -1.0 +0.0 +0.1 -0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -0.6 -0.4 -0.3 +0.3 -0.5
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.6 -0.2 -0.1 +0.1 -0.5
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae -0.4 -0.8 +0.2 +0.2 -0.6
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -0.3 -0.2 -0.2 +0.2 -0.8
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.5 -0.4 -0.4 +0.0 -0.1
no phage control BHIS_CaCl2 no phage control -0.4 -0.2 +0.1 +0.0 -0.7
no phage control BHIS_CaCl2 no phage control +0.2 -0.6 +0.1 -0.0 -1.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.7 -0.7 -0.1 +0.2 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.5 -0.5 +0.1 +0.0 -0.3
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.5 -0.9 +0.4 +0.2 -0.3
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI -0.6 -0.3 +0.2 -0.0 -0.3
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae -0.4 -0.3 +0.1 +0.1 -0.6
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -0.9 -0.3 +0.2 +0.3 -0.3
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.2 -0.4 +0.0 +0.2 -0.6
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.7 -0.5 +0.4 +0.1 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.6 -0.1 +0.2 +0.1 -0.4
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.6 -0.6 +0.3 +0.2 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.8 -0.4 +0.4 +0.1 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.5 -0.5 +0.4 +0.0 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.5 -0.3 +0.4 -0.0 -0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.3 -0.4 +0.2 +0.3 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -1.0 +0.0 +0.2 +0.3 +0.3
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae -0.3 -0.3 +0.7 +0.1 -0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.3 -0.3 +0.5 +0.2 +0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.6 +0.3 +0.8 +0.1 +0.2
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