Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_00581 and EFB2_00582 overlap by 1 nucleotidesEFB2_00582 and EFB2_00583 are separated by 8 nucleotidesEFB2_00583 and EFB2_00584 overlap by 11 nucleotidesEFB2_00584 and EFB2_00585 are separated by 67 nucleotides EFB2_00581: EFB2_00581 - Cell shape-determining protein MreC, at 586,404 to 587,507 _00581 EFB2_00582: EFB2_00582 - Rod shape-determining protein MreD, at 587,507 to 587,995 _00582 EFB2_00583: EFB2_00583 - dTTP/UTP pyrophosphatase, at 588,004 to 588,597 _00583 EFB2_00584: EFB2_00584 - Ribonuclease G, at 588,587 to 590,056 _00584 EFB2_00585: EFB2_00585 - hypothetical protein, at 590,124 to 593,924 _00585
Group Condition EFB2_00581 EFB2_00582 EFB2_00583 EFB2_00584 EFB2_00585
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae N.D. N.D. -0.2 -0.8 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. N.D. -0.1 -0.8 +0.1
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI N.D. N.D. -0.1 -0.6 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. N.D. -0.1 -0.7 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. N.D. -0.2 -0.5 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community N.D. N.D. -0.1 -0.7 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community N.D. N.D. +0.0 -0.7 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) N.D. N.D. -0.2 -0.4 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae N.D. N.D. -0.1 -0.6 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae N.D. N.D. -0.1 -0.6 +0.0
no phage control BHIS_CaCl2 no phage control N.D. N.D. -0.3 -0.4 -0.0
no phage control BHIS_CaCl2 no phage control N.D. N.D. -0.1 -0.5 +0.0
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI N.D. N.D. -0.1 -0.5 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. N.D. -0.1 -0.6 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) N.D. N.D. -0.1 -0.6 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) N.D. N.D. -0.1 -0.6 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. N.D. -0.1 -0.6 +0.0
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI N.D. N.D. -0.0 -0.6 +0.0
no phage control BHIS no phage control N.D. N.D. -0.1 -0.5 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. N.D. -0.2 -0.4 -0.0
no phage control BHIS_CaCl2 no phage control N.D. N.D. -0.0 -0.5 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. N.D. -0.1 -0.5 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. N.D. +0.1 -0.6 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. N.D. +0.0 -0.5 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. N.D. -0.1 -0.4 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) N.D. N.D. -0.1 -0.4 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community N.D. N.D. +0.1 -0.5 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. N.D. +0.1 -0.4 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. N.D. +0.1 -0.5 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae N.D. N.D. +0.2 -0.5 +0.1
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