Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_00573 and EFB2_00574 are separated by 21 nucleotidesEFB2_00574 and EFB2_00575 overlap by 4 nucleotidesEFB2_00575 and EFB2_00576 are separated by 91 nucleotidesEFB2_00576 and EFB2_00577 are separated by 10 nucleotides EFB2_00573: EFB2_00573 - Ribose import permease protein RbsC, at 576,008 to 576,997 _00573 EFB2_00574: EFB2_00574 - Tagatose kinase, at 577,019 to 577,981 _00574 EFB2_00575: EFB2_00575 - hypothetical protein, at 577,978 to 579,024 _00575 EFB2_00576: EFB2_00576 - Biotin carboxylase, at 579,116 to 580,465 _00576 EFB2_00577: EFB2_00577 - Biotin carboxyl carrier protein of acetyl-CoA carboxylase, at 580,476 to 580,946 _00577
Group Condition EFB2_00573 EFB2_00574 EFB2_00575 EFB2_00576 EFB2_00577
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.3 +0.0 -0.1 N.D. N.D.
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae -0.3 -0.0 +0.0 N.D. N.D.
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.2 +0.0 -0.1 N.D. N.D.
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.2 -0.1 +0.1 N.D. N.D.
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.3 +0.1 +0.0 N.D. N.D.
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae -0.1 +0.1 -0.1 N.D. N.D.
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 +0.1 +0.1 N.D. N.D.
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -0.1 +0.1 +0.1 N.D. N.D.
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.2 -0.0 -0.1 N.D. N.D.
no phage control BHIS no phage control +0.2 +0.0 -0.1 N.D. N.D.
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.2 -0.0 -0.1 N.D. N.D.
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.2 +0.0 -0.1 N.D. N.D.
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.2 -0.1 +0.0 N.D. N.D.
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.2 +0.0 -0.1 N.D. N.D.
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 +0.1 -0.0 N.D. N.D.
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.3 -0.0 -0.0 N.D. N.D.
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.2 +0.1 -0.1 N.D. N.D.
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community +0.2 +0.1 -0.1 N.D. N.D.
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.0 +0.1 +0.1 N.D. N.D.
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.3 +0.1 -0.1 N.D. N.D.
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.2 +0.1 +0.0 N.D. N.D.
no phage control BHIS no phage control +0.1 +0.1 +0.0 N.D. N.D.
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae +0.1 +0.1 +0.1 N.D. N.D.
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 +0.1 +0.0 N.D. N.D.
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.2 +0.1 +0.0 N.D. N.D.
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.2 +0.1 -0.0 N.D. N.D.
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.3 -0.0 +0.1 N.D. N.D.
no phage control BHIS_CaCl2 no phage control +0.2 +0.1 +0.0 N.D. N.D.
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.2 +0.1 +0.1 N.D. N.D.
no phage control BHIS_CaCl2 no phage control +0.2 +0.1 +0.3 N.D. N.D.
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EFB2_00577
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