Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_00571 and EFB2_00572 are separated by 60 nucleotidesEFB2_00572 and EFB2_00573 are separated by 0 nucleotidesEFB2_00573 and EFB2_00574 are separated by 21 nucleotidesEFB2_00574 and EFB2_00575 overlap by 4 nucleotides EFB2_00571: EFB2_00571 - Ribose import binding protein RbsB, at 573,557 to 574,447 _00571 EFB2_00572: EFB2_00572 - Ribose import ATP-binding protein RbsA, at 574,508 to 576,007 _00572 EFB2_00573: EFB2_00573 - Ribose import permease protein RbsC, at 576,008 to 576,997 _00573 EFB2_00574: EFB2_00574 - Tagatose kinase, at 577,019 to 577,981 _00574 EFB2_00575: EFB2_00575 - hypothetical protein, at 577,978 to 579,024 _00575
Group Condition EFB2_00571 EFB2_00572 EFB2_00573 EFB2_00574 EFB2_00575
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 +0.1 -0.3 +0.0 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 -0.0 -0.2 -0.1 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 -0.1 +0.2 -0.0 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 +0.1 -0.2 +0.0 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.2 +0.1 +0.2 -0.1 +0.0
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.2 +0.1 -0.3 -0.0 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.2 -0.1 -0.1 +0.1 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.2 -0.0 -0.1 -0.1 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 +0.1 -0.3 +0.1 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 -0.2 +0.3 -0.0 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 +0.1 -0.1 +0.1 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -0.1 -0.1 +0.2 +0.1 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.0 -0.0 +0.2 +0.1 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.2 +0.2 +0.3 -0.0 -0.0
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI +0.1 -0.1 +0.1 -0.0 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 +0.1 +0.3 +0.1 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -0.1 +0.1 +0.1 +0.1 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 -0.1 +0.2 +0.1 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 -0.0 +0.1 +0.1 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.0 +0.2 +0.2 +0.0 -0.1
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.2 +0.1 +0.2 -0.0 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.4 -0.0 +0.2 -0.0 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.2 +0.0 +0.0 +0.1 +0.1
no phage control BHIS no phage control +0.2 -0.0 +0.1 +0.1 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.2 +0.1 +0.1 +0.1 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.3 +0.0 +0.2 +0.0 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.2 -0.0 +0.2 +0.1 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -0.0 +0.1 +0.2 +0.1 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community +0.1 +0.1 +0.2 +0.1 -0.1
no phage control BHIS_CaCl2 no phage control +0.2 -0.3 +0.2 +0.1 +0.3
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EFB2_00571
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EFB2_00572
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EFB2_00575
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