Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_00558 and EFB2_00559 are separated by 11 nucleotidesEFB2_00559 and EFB2_00560 are separated by 398 nucleotidesEFB2_00560 and EFB2_00561 are separated by 2 nucleotidesEFB2_00561 and EFB2_00562 are separated by 83 nucleotides EFB2_00558: EFB2_00558 - Multidrug export protein AcrF, at 559,673 to 562,777 _00558 EFB2_00559: EFB2_00559 - Multidrug export protein AcrE, at 562,789 to 563,946 _00559 EFB2_00560: EFB2_00560 - HTH-type transcriptional regulator AcrR, at 564,345 to 565,007 _00560 EFB2_00561: EFB2_00561 - hypothetical protein, at 565,010 to 565,189 _00561 EFB2_00562: EFB2_00562 - DNA adenine methyltransferase YhdJ, at 565,273 to 566,157 _00562
Group Condition EFB2_00558 EFB2_00559 EFB2_00560 EFB2_00561 EFB2_00562
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.0 -0.0 +0.0 -0.7 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.0 +0.0 +0.0 -0.4 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae +0.1 +0.0 -0.1 -0.5 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.0 -0.0 +0.0 -0.3 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.0 +0.0 -0.2 -0.2 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.0 -0.0 +0.2 -0.3 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.0 +0.0 -0.2 -0.2 +0.1
no phage control BHIS no phage control +0.0 -0.1 +0.1 -0.2 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 +0.0 -0.1 -0.3 +0.1
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI +0.1 -0.1 +0.1 -0.3 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.0 +0.1 -0.2 -0.2 +0.1
no phage control BHIS_CaCl2 no phage control -0.0 +0.0 +0.2 -0.2 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.0 -0.0 +0.1 -0.1 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 +0.1 -0.3 +0.2 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.0 +0.1 -0.1 +0.2 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae +0.1 +0.1 +0.2 -0.0 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 -0.1 -0.0 +0.2 +0.1
mixed community no phage control BHIS no phage control with 14 member community -0.1 +0.1 +0.1 +0.2 +0.0
no phage control BHIS_CaCl2 no phage control +0.1 +0.1 -0.1 +0.3 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.0 -0.0 +0.0 +0.4 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.0 +0.1 -0.0 +0.5 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.0 +0.0 -0.1 +0.5 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.0 -0.0 +0.2 +0.4 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.0 -0.0 +0.1 +0.4 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 +0.0 +0.4 +0.0 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.0 +0.1 +0.2 +0.3 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.0 +0.1 +0.2 +0.3 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.0 +0.1 +0.2 +0.4 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.0 +0.0 -0.1 +0.8 +0.0
no phage control BHIS_CaCl2 no phage control -0.0 -0.1 +0.9 +0.3 +0.0
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