Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_00484 and EFB2_00485 are separated by 291 nucleotidesEFB2_00485 and EFB2_00486 are separated by 168 nucleotidesEFB2_00486 and EFB2_00487 are separated by 71 nucleotidesEFB2_00487 and EFB2_00488 are separated by 28 nucleotides EFB2_00484: EFB2_00484 - Elongation factor Tu 1, at 506,625 to 507,809 _00484 EFB2_00485: EFB2_00485 - putative bifunctional chitinase/lysozyme, at 508,101 to 510,800 _00485 EFB2_00486: EFB2_00486 - Bacterioferritin-associated ferredoxin, at 510,969 to 511,163 _00486 EFB2_00487: EFB2_00487 - Bacterioferritin, at 511,235 to 511,711 _00487 EFB2_00488: EFB2_00488 - Type 4 prepilin-like proteins leader peptide-processing enzyme, at 511,740 to 512,417 _00488
Group Condition EFB2_00484 EFB2_00485 EFB2_00486 EFB2_00487 EFB2_00488
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community N.D. -0.0 -0.1 -0.1 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. -0.0 -0.2 -0.2 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) N.D. +0.0 -0.3 +0.0 -0.1
mixed community no phage control BHIS no phage control with 14 member community N.D. +0.0 -0.2 -0.0 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) N.D. +0.0 -0.3 +0.0 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae N.D. +0.1 -0.1 -0.0 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. +0.0 +0.2 -0.2 -0.1
no phage control BHIS no phage control N.D. -0.0 -0.3 +0.0 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. +0.1 -0.1 +0.0 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. +0.0 +0.0 +0.1 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. +0.0 +0.1 -0.2 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. +0.1 -0.1 +0.1 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. +0.0 -0.2 +0.0 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. +0.0 -0.3 +0.2 +0.0
no phage control BHIS no phage control N.D. +0.0 +0.1 -0.1 +0.1
no phage control BHIS no phage control N.D. +0.0 +0.2 -0.0 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) N.D. +0.0 -0.1 -0.0 +0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. +0.0 +0.1 -0.1 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. +0.0 +0.1 +0.1 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. -0.1 +0.2 +0.0 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community N.D. +0.0 +0.2 -0.1 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. -0.0 +0.2 -0.2 +0.2
no phage control BHIS_CaCl2 no phage control N.D. -0.0 -0.0 +0.1 +0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. +0.0 -0.0 +0.1 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) N.D. +0.0 +0.2 -0.1 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. +0.0 +0.0 +0.1 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. -0.0 +0.3 -0.0 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. +0.1 +0.1 +0.1 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community N.D. +0.0 +0.3 +0.0 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. -0.0 +0.3 +0.3 +0.1
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