Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_00463 and EFB2_00464 are separated by 66 nucleotidesEFB2_00464 and EFB2_00465 are separated by 50 nucleotidesEFB2_00465 and EFB2_00466 are separated by 301 nucleotidesEFB2_00466 and EFB2_00467 are separated by 54 nucleotides EFB2_00463: EFB2_00463 - Acetylornithine/succinyldiaminopimelate aminotransferase, at 487,774 to 488,994 _00463 EFB2_00464: EFB2_00464 - hypothetical protein, at 489,061 to 491,151 _00464 EFB2_00465: EFB2_00465 - cAMP-activated global transcriptional regulator CRP, at 491,202 to 491,834 _00465 EFB2_00466: EFB2_00466 - Protein YhfA, at 492,136 to 492,540 _00466 EFB2_00467: EFB2_00467 - Phosphoribulokinase, plasmid, at 492,595 to 493,464 _00467
Group Condition EFB2_00463 EFB2_00464 EFB2_00465 EFB2_00466 EFB2_00467
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae -0.1 -0.0 N.D. -0.5 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.0 +0.1 N.D. -0.4 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 -0.1 N.D. -0.4 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.0 -0.0 N.D. -0.2 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 -0.0 N.D. -0.3 +0.1
no phage control BHIS_CaCl2 no phage control +0.1 +0.2 N.D. -0.4 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 -0.0 N.D. +0.1 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 +0.0 N.D. +0.2 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 -0.1 N.D. +0.2 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 -0.0 N.D. +0.3 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community +0.1 -0.0 N.D. +0.1 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.0 -0.0 N.D. +0.3 +0.0
mixed community no phage control BHIS no phage control with 14 member community +0.1 -0.0 N.D. +0.1 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.0 +0.0 N.D. +0.3 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community +0.1 -0.0 N.D. +0.2 +0.1
no phage control BHIS no phage control +0.0 +0.0 N.D. +0.2 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.0 +0.1 N.D. +0.2 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.0 +0.0 N.D. +0.2 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.0 -0.1 N.D. +0.3 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae +0.2 -0.0 N.D. +0.1 +0.0
mixed community no phage control BHIS no phage control with 14 member community +0.0 +0.0 N.D. +0.2 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae +0.0 +0.0 N.D. +0.2 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 +0.0 N.D. +0.3 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 +0.1 N.D. +0.2 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.0 -0.0 N.D. +0.2 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.0 -0.0 N.D. +0.3 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.0 +0.0 N.D. +0.3 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community +0.1 +0.1 N.D. +0.2 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.0 -0.1 N.D. +0.4 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 -0.0 N.D. +0.4 +0.1
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