Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_00422 and EFB2_00423 are separated by 227 nucleotidesEFB2_00423 and EFB2_00424 overlap by 4 nucleotidesEFB2_00424 and EFB2_00425 are separated by 76 nucleotidesEFB2_00425 and EFB2_00426 are separated by 378 nucleotides EFB2_00422: EFB2_00422 - Transcription elongation factor GreB, at 446,001 to 446,477 _00422 EFB2_00423: EFB2_00423 - Transcriptional regulatory protein OmpR, at 446,705 to 447,424 _00423 EFB2_00424: EFB2_00424 - Osmolarity sensor protein EnvZ, at 447,421 to 448,773 _00424 EFB2_00425: EFB2_00425 - Phosphoenolpyruvate carboxykinase (ATP), at 448,850 to 450,472 _00425 EFB2_00426: EFB2_00426 - hypothetical protein, at 450,851 to 452,575 _00426
Group Condition EFB2_00422 EFB2_00423 EFB2_00424 EFB2_00425 EFB2_00426
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 -1.2 -1.0 -0.0 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 -1.3 -0.9 +0.0 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.0 -1.0 -0.9 +0.1 +0.0
mixed community no phage control BHIS no phage control with 14 member community +0.3 -0.5 -0.2 -0.1 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.2 -0.2 -0.2 +0.0 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.2 -0.2 -0.1 +0.2 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae +0.1 +0.3 +0.3 -0.1 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.0 +0.4 +0.2 -0.1 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae +0.1 +0.4 +0.3 -0.1 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 +0.4 +0.1 +0.1 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community +0.0 +0.3 +0.3 -0.0 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.1 +0.5 +0.2 -0.0 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.0 +0.4 +0.3 +0.0 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 +0.4 +0.1 +0.1 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae +0.2 +0.5 +0.3 -0.1 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae +0.0 +0.4 +0.3 -0.0 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 +0.4 +0.3 +0.1 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.0 +0.5 +0.3 +0.0 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.0 +0.5 +0.3 +0.0 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community +0.1 +0.6 +0.3 +0.0 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae +0.2 +0.4 +0.3 +0.1 -0.0
no phage control BHIS_CaCl2 no phage control -0.3 +0.6 +0.6 +0.1 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.2 +0.4 +0.4 +0.0 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.0 +0.7 +0.4 +0.0 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 +0.3 +0.4 +0.1 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.0 +0.6 +0.4 +0.1 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 +0.5 +0.3 +0.0 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 +0.6 +0.3 +0.1 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 +0.6 +0.4 +0.1 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 +0.6 +0.4 +0.1 +0.1
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EFB2_00422
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EFB2_00423
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EFB2_00425
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EFB2_00426
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