Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_00416 and EFB2_00417 are separated by 28 nucleotidesEFB2_00417 and EFB2_00418 are separated by 232 nucleotidesEFB2_00418 and EFB2_00419 are separated by 10 nucleotidesEFB2_00419 and EFB2_00420 are separated by 16 nucleotides EFB2_00416: EFB2_00416 - Pimeloyl-[acyl-carrier protein] methyl ester esterase, at 438,706 to 439,476 _00416 EFB2_00417: EFB2_00417 - ISNCY family transposase ISRor2, at 439,505 to 440,098 _00417 EFB2_00418: EFB2_00418 - putative [Fe-S]-dependent transcriptional repressor FeoC, at 440,331 to 440,567 _00418 EFB2_00419: EFB2_00419 - Fe(2+) transporter FeoB, at 440,578 to 442,899 _00419 EFB2_00420: EFB2_00420 - Fe(2+) transport protein A, at 442,916 to 443,143 _00420
Group Condition EFB2_00416 EFB2_00417 EFB2_00418 EFB2_00419 EFB2_00420
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.0 +0.1 -0.4 -0.8 -1.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 -0.1 -0.8 -0.5 -0.6
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.0 +0.0 -0.4 -0.6 -0.9
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.0 -0.1 -0.0 -0.6 -1.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 -0.0 -0.7 -0.4 -0.5
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.0 -0.0 -0.6 -0.5 -0.6
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -0.1 -0.1 -0.3 -0.5 -0.7
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 -0.0 -0.3 -0.6 -0.7
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -0.1 -0.0 -0.4 -0.5 -0.6
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.0 +0.0 -0.6 -0.5 -0.6
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae -0.1 +0.1 -0.5 -0.5 -0.5
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae -0.1 +0.1 -0.6 -0.5 -0.5
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 -0.0 -0.3 -0.5 -0.7
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 -0.0 -0.2 -0.6 -0.6
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 -0.0 -0.4 -0.3 -0.7
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -0.1 +0.0 -0.4 -0.6 -0.5
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 +0.0 -0.3 -0.7 -0.5
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.0 +0.0 -0.5 -0.3 -0.6
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.0 -0.0 -0.2 -0.6 -0.5
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -0.1 +0.1 -0.1 -0.6 -0.7
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.2 -0.0 -0.0 -0.5 -0.6
no phage control BHIS_CaCl2 no phage control -0.1 -0.0 -0.2 -0.4 -0.6
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 -0.1 -0.1 -0.6 -0.4
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.0 +0.0 -0.1 -0.6 -0.7
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.0 -0.1 -0.1 -0.5 -0.6
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.0 +0.1 -0.3 -0.6 -0.5
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 -0.1 -0.0 -0.6 -0.7
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.0 +0.0 -0.3 -0.5 -0.6
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.0 -0.0 +0.3 -0.6 -0.6
no phage control BHIS_CaCl2 no phage control +0.0 -0.0 +0.7 -0.1 +0.8
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