Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_00384 and EFB2_00385 are separated by 56 nucleotidesEFB2_00385 and EFB2_00386 are separated by 191 nucleotidesEFB2_00386 and EFB2_00387 are separated by 272 nucleotidesEFB2_00387 and EFB2_00388 overlap by 4 nucleotides EFB2_00384: EFB2_00384 - Low-affinity gluconate transporter, at 397,127 to 398,467 _00384 EFB2_00385: EFB2_00385 - hypothetical protein, at 398,524 to 399,117 _00385 EFB2_00386: EFB2_00386 - Aspartate-semialdehyde dehydrogenase, at 399,309 to 400,412 _00386 EFB2_00387: EFB2_00387 - 1,4-alpha-glucan branching enzyme GlgB, at 400,685 to 402,871 _00387 EFB2_00388: EFB2_00388 - Glycogen debranching enzyme, at 402,868 to 404,841 _00388
Group Condition EFB2_00384 EFB2_00385 EFB2_00386 EFB2_00387 EFB2_00388
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.2 -0.1 N.D. -0.2 -0.0
no phage control BHIS_CaCl2 no phage control -0.1 -0.1 N.D. +0.1 -0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -0.1 -0.1 N.D. -0.1 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 -0.3 N.D. -0.1 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 -0.1 N.D. -0.1 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -0.1 -0.2 N.D. -0.1 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 -0.1 N.D. -0.1 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 -0.0 N.D. -0.1 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.0 -0.1 N.D. -0.0 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 -0.1 N.D. -0.1 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 -0.0 N.D. -0.1 -0.0
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae -0.1 -0.1 N.D. +0.0 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 +0.1 N.D. -0.0 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -0.1 -0.0 N.D. -0.1 +0.1
mixed community no phage control BHIS no phage control with 14 member community -0.1 +0.1 N.D. -0.1 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae +0.0 +0.1 N.D. -0.1 -0.1
mixed community no phage control BHIS no phage control with 14 member community -0.1 +0.1 N.D. -0.0 -0.0
no phage control BHIS no phage control -0.1 +0.2 N.D. -0.1 -0.0
mixed community no phage control BHIS no phage control with 14 member community -0.2 +0.2 N.D. -0.1 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.0 +0.2 N.D. -0.1 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.2 +0.2 N.D. +0.0 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.2 -0.0 N.D. -0.2 +0.0
no phage control BHIS no phage control -0.1 +0.1 N.D. -0.0 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae +0.1 -0.1 N.D. -0.1 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.0 +0.1 N.D. -0.1 +0.0
no phage control BHIS no phage control +0.1 +0.1 N.D. -0.1 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 +0.1 N.D. -0.1 +0.0
no phage control BHIS_CaCl2 no phage control +0.1 +0.1 N.D. -0.1 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.1 +0.1 N.D. -0.0 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 +0.2 N.D. -0.0 +0.1
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