Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_00317 and EFB2_00318 are separated by 7 nucleotidesEFB2_00318 and EFB2_00319 are separated by 48 nucleotidesEFB2_00319 and EFB2_00320 are separated by 316 nucleotidesEFB2_00320 and EFB2_00321 are separated by 390 nucleotides EFB2_00317: EFB2_00317 - Oligopeptidase A, at 329,542 to 331,584 _00317 EFB2_00318: EFB2_00318 - Ribosomal RNA small subunit methyltransferase J, at 331,592 to 332,344 _00318 EFB2_00319: EFB2_00319 - Dipeptide and tripeptide permease B, at 332,393 to 333,862 _00319 EFB2_00320: EFB2_00320 - Universal stress protein A, at 334,179 to 334,613 _00320 EFB2_00321: EFB2_00321 - Universal stress protein B, at 335,004 to 335,339 _00321
Group Condition EFB2_00317 EFB2_00318 EFB2_00319 EFB2_00320 EFB2_00321
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 -0.2 -0.3 -0.4 -0.7
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.2 -0.2 -0.5 +0.0 -0.8
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 -0.2 -0.4 -0.3 -0.7
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 -0.3 -0.3 -0.3 -0.7
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 -0.2 -0.2 -0.4 -0.6
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 -0.3 -0.2 -0.3 -0.7
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 -0.2 -0.5 -0.2 -0.7
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.2 -0.1 -0.4 -0.2 -0.6
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.2 -0.2 -0.2 -0.3 -0.6
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 -0.0 -0.4 -0.2 -0.7
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.2 +0.1 -0.3 -0.3 -0.7
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 -0.1 -0.3 -0.3 -0.7
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 +0.1 -0.5 -0.4 -0.6
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.0 -0.1 -0.3 -0.3 -0.6
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 -0.0 -0.3 -0.2 -0.8
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 -0.0 -0.3 -0.4 -0.6
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 -0.1 -0.3 -0.1 -0.7
mixed community no phage control BHIS no phage control with 14 member community -0.2 -0.1 -0.2 -0.3 -0.6
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 -0.0 -0.4 -0.2 -0.6
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.2 +0.2 -0.5 -0.2 -0.7
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 -0.1 -0.4 -0.2 -0.6
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae -0.1 -0.2 -0.2 -0.3 -0.6
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 +0.1 -0.4 -0.2 -0.6
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -0.1 +0.1 -0.3 -0.3 -0.7
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 +0.1 -0.3 -0.3 -0.7
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -0.1 +0.1 -0.2 -0.3 -0.6
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.2 +0.2 -0.3 -0.2 -0.6
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 +0.2 -0.4 -0.1 -0.6
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -0.1 +0.2 -0.3 -0.2 -0.6
no phage control BHIS_CaCl2 no phage control -0.1 +0.6 +1.0 -0.2 +0.4
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