Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_00301 and EFB2_00302 are separated by 51 nucleotidesEFB2_00302 and EFB2_00303 overlap by 4 nucleotidesEFB2_00303 and EFB2_00304 are separated by 84 nucleotidesEFB2_00304 and EFB2_00305 overlap by 1 nucleotides EFB2_00301: EFB2_00301 - Protein SapB, at 314,107 to 314,682 _00301 EFB2_00302: EFB2_00302 - Hemin import ATP-binding protein HmuV, at 314,734 to 315,504 _00302 EFB2_00303: EFB2_00303 - Hemin transport system permease protein HmuU, at 315,501 to 316,457 _00303 EFB2_00304: EFB2_00304 - hypothetical protein, at 316,542 to 317,165 _00304 EFB2_00305: EFB2_00305 - Intracellular heme transport protein HutX, at 317,165 to 317,659 _00305
Group Condition EFB2_00301 EFB2_00302 EFB2_00303 EFB2_00304 EFB2_00305
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.2 -0.0 -0.0 -0.4 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.0 -0.0 +0.0 -0.3 -0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 +0.0 -0.1 -0.2 -0.1
no phage control BHIS no phage control -0.1 +0.0 +0.0 -0.3 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.0 -0.1 -0.1 +0.0 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 +0.1 +0.0 -0.3 -0.0
mixed community no phage control BHIS no phage control with 14 member community -0.2 +0.1 +0.0 -0.2 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.0 -0.2 +0.1 -0.0 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.2 -0.1 +0.1 -0.3 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 +0.0 +0.1 -0.3 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -0.1 +0.0 -0.1 +0.1 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.0 +0.1 +0.0 -0.2 -0.0
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI +0.1 +0.1 -0.0 -0.1 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.0 -0.1 +0.0 +0.2 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae +0.1 -0.1 -0.0 +0.3 -0.1
no phage control BHIS_CaCl2 no phage control -0.0 +0.4 +0.3 -0.7 +0.1
no phage control BHIS no phage control +0.1 -0.0 +0.2 -0.1 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.2 -0.1 -0.0 +0.0 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae +0.1 +0.0 -0.0 +0.2 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.2 +0.0 +0.1 -0.1 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 -0.1 -0.0 +0.3 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 -0.1 +0.1 +0.1 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 +0.0 -0.1 +0.2 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 -0.1 -0.1 +0.2 -0.0
no phage control BHIS no phage control -0.1 +0.1 +0.1 +0.2 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.0 +0.0 +0.0 +0.3 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 +0.1 +0.1 +0.1 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 +0.1 +0.1 +0.1 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 +0.1 -0.1 +0.4 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.2 +0.0 -0.0 +0.4 -0.1
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EFB2_00301
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EFB2_00302
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EFB2_00304
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EFB2_00305
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