Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_00266 and EFB2_00267 overlap by 4 nucleotidesEFB2_00267 and EFB2_00268 are separated by 29 nucleotidesEFB2_00268 and EFB2_00269 are separated by 475 nucleotidesEFB2_00269 and EFB2_00270 are separated by 86 nucleotides EFB2_00266: EFB2_00266 - Dipeptide transport ATP-binding protein DppD, at 266,111 to 267,094 _00266 EFB2_00267: EFB2_00267 - Oligopeptide transport ATP-binding protein OppF, at 267,091 to 268,095 _00267 EFB2_00268: EFB2_00268 - Inner membrane transport protein YhjV, at 268,125 to 269,396 _00268 EFB2_00269: EFB2_00269 - Small toxic polypeptide LdrD, at 269,872 to 269,979 _00269 EFB2_00270: EFB2_00270 - Cellulose biosynthesis protein BcsG, at 270,066 to 271,745 _00270
Group Condition EFB2_00266 EFB2_00267 EFB2_00268 EFB2_00269 EFB2_00270
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.2 -0.0 +0.0 -0.7 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.0 +0.0 -0.1 -0.4 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.2 -0.1 -0.1 +0.0 -0.1
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.0 -0.0 +0.0 -0.4 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.0 -0.1 -0.0 -0.2 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.0 -0.1 -0.0 -0.4 -0.0
no phage control BHIS_CaCl2 no phage control +0.0 -0.1 +0.0 -0.4 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 +0.0 -0.0 -0.2 -0.1
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI +0.0 -0.2 -0.0 -0.1 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.0 +0.1 -0.0 -0.4 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -0.1 -0.0 +0.1 -0.2 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae +0.0 +0.1 +0.0 -0.3 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.0 +0.1 +0.1 -0.4 +0.0
mixed community no phage control BHIS no phage control with 14 member community +0.0 +0.1 +0.1 -0.2 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 -0.1 -0.0 +0.2 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 -0.0 -0.1 +0.3 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.0 +0.0 -0.1 +0.2 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 -0.2 -0.0 +0.3 -0.1
no phage control BHIS no phage control +0.2 +0.1 +0.0 -0.1 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 -0.0 -0.0 +0.3 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 +0.0 -0.0 +0.3 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.0 -0.1 -0.0 +0.5 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 -0.1 +0.0 +0.4 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.1 +0.0 -0.0 +0.4 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.0 +0.0 +0.1 +0.4 -0.0
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.2 +0.0 +0.0 +0.2 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.0 +0.0 -0.0 +0.6 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.0 +0.0 -0.0 +0.6 -0.0
mixed community no phage control BHIS no phage control with 14 member community +0.0 -0.0 -0.0 +0.7 +0.0
no phage control BHIS_CaCl2 no phage control +0.3 -0.0 +0.1 -0.7 +2.3
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EFB2_00266
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EFB2_00267
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EFB2_00269
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EFB2_00270
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