Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_00209 and EFB2_00210 are separated by 558 nucleotidesEFB2_00210 and EFB2_00211 are separated by 283 nucleotidesEFB2_00211 and EFB2_00212 are separated by 10 nucleotidesEFB2_00212 and EFB2_00213 overlap by 1 nucleotides EFB2_00209: EFB2_00209 - Inner membrane lipoprotein SadB, at 203,473 to 204,156 _00209 EFB2_00210: EFB2_00210 - putative protein YibL, at 204,715 to 205,077 _00210 EFB2_00211: EFB2_00211 - hypothetical protein, at 205,361 to 205,570 _00211 EFB2_00212: EFB2_00212 - Mannitol operon repressor, at 205,581 to 206,168 _00212 EFB2_00213: EFB2_00213 - Mannitol-1-phosphate 5-dehydrogenase, at 206,168 to 207,316 _00213
Group Condition EFB2_00209 EFB2_00210 EFB2_00211 EFB2_00212 EFB2_00213
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.0 -0.5 -0.2 -0.2 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.0 -0.2 -0.0 -0.2 -0.5
no phage control BHIS no phage control -0.1 -0.1 +0.1 +0.0 -0.6
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.2 -0.1 -0.1 -0.3 -0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.0 +0.2 +0.0 -0.3 -0.4
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.2 -0.4 +0.0 +0.0 -0.3
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.2 +0.1 -0.1 +0.2 -0.5
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae -0.3 +0.2 +0.0 -0.1 -0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae +0.2 -0.1 +0.1 +0.1 -0.5
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.2 -0.2 +0.1 -0.1 -0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -0.1 +0.2 +0.1 -0.1 -0.5
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.4 +0.0 -0.1 -0.2 -0.4
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.2 -0.1 +0.0 +0.1 -0.4
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 +0.3 +0.0 -0.3 -0.3
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae +0.4 +0.0 -0.0 -0.2 -0.5
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 +0.2 -0.0 -0.1 -0.4
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.4 -0.1 +0.0 +0.1 -0.6
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.2 +0.1 +0.1 -0.1 -0.4
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.3 +0.2 -0.1 -0.1 -0.4
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.2 +0.3 -0.0 -0.1 -0.4
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.3 -0.2 +0.1 +0.1 -0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 +0.3 -0.1 +0.0 -0.4
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.3 +0.3 -0.2 +0.0 -0.5
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.2 -0.2 -0.1 +0.4 -0.3
no phage control BHIS no phage control +0.2 -0.1 -0.0 +0.2 -0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 +0.3 -0.0 +0.1 -0.3
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community +0.4 +0.2 +0.1 -0.3 -0.3
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.3 +0.4 -0.1 -0.1 -0.4
no phage control BHIS_CaCl2 no phage control +0.2 +0.4 -0.0 -0.1 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 +0.4 -0.0 +0.2 -0.4
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