Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_00197 and EFB2_00198 are separated by 33 nucleotidesEFB2_00198 and EFB2_00199 are separated by 244 nucleotidesEFB2_00199 and EFB2_00200 are separated by 140 nucleotidesEFB2_00200 and EFB2_00201 are separated by 62 nucleotides EFB2_00197: EFB2_00197 - Murein hydrolase activator EnvC, at 187,272 to 188,531 _00197 EFB2_00198: EFB2_00198 - 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, at 188,565 to 190,109 _00198 EFB2_00199: EFB2_00199 - putative protein YibN, at 190,354 to 190,785 _00199 EFB2_00200: EFB2_00200 - Glutaredoxin 3, at 190,926 to 191,177 _00200 EFB2_00201: EFB2_00201 - Protein-export protein SecB, at 191,240 to 191,707 _00201
Group Condition EFB2_00197 EFB2_00198 EFB2_00199 EFB2_00200 EFB2_00201
no phage control BHIS_CaCl2 no phage control -1.0 -2.1 -0.4 -1.5 N.D.
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 -2.5 -0.1 -0.1 N.D.
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.2 -1.9 -0.3 -0.2 N.D.
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 -2.1 +0.1 -0.3 N.D.
no phage control BHIS_CaCl2 no phage control -0.1 -1.8 -0.2 -0.1 N.D.
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI +0.0 -2.1 -0.1 -0.1 N.D.
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.0 -2.3 -0.0 +0.1 N.D.
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.0 -2.3 -0.1 +0.1 N.D.
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 -2.2 +0.1 +0.1 N.D.
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.0 -2.2 -0.2 +0.3 N.D.
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI -0.2 -1.9 +0.1 -0.0 N.D.
no phage control BHIS no phage control -0.2 -1.9 -0.2 +0.2 N.D.
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 -2.2 -0.0 +0.1 N.D.
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 -2.1 +0.2 -0.2 N.D.
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.0 -2.2 +0.2 +0.0 N.D.
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 -2.2 +0.1 +0.3 N.D.
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community +0.1 -1.9 +0.1 -0.1 N.D.
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 -2.1 +0.3 +0.1 N.D.
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 -2.0 +0.3 +0.0 N.D.
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 -1.9 -0.1 +0.2 N.D.
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.0 -1.9 +0.1 +0.3 N.D.
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 -2.2 +0.3 +0.3 N.D.
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae +0.2 -1.9 +0.2 +0.1 N.D.
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.2 -1.7 -0.2 +0.3 N.D.
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 -1.8 +0.1 +0.5 N.D.
mixed community no phage control BHIS no phage control with 14 member community -0.1 -1.5 -0.1 +0.6 N.D.
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.2 -1.9 +0.3 +0.3 N.D.
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.0 -1.8 +0.2 +0.5 N.D.
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae -0.0 -1.8 +0.5 +0.3 N.D.
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.4 -1.9 +0.2 +0.4 N.D.
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