Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_00191 and EFB2_00192 are separated by 9 nucleotidesEFB2_00192 and EFB2_00193 are separated by 213 nucleotidesEFB2_00193 and EFB2_00194 are separated by 9 nucleotidesEFB2_00194 and EFB2_00195 are separated by 238 nucleotides EFB2_00191: EFB2_00191 - ADP-heptose--LPS heptosyltransferase 2, at 180,616 to 181,662 _00191 EFB2_00192: EFB2_00192 - ADP-L-glycero-D-manno-heptose-6-epimerase, at 181,672 to 182,604 _00192 EFB2_00193: EFB2_00193 - 2-amino-3-ketobutyrate coenzyme A ligase, at 182,818 to 184,014 _00193 EFB2_00194: EFB2_00194 - L-threonine 3-dehydrogenase, at 184,024 to 185,049 _00194 EFB2_00195: EFB2_00195 - Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase, at 185,288 to 186,322 _00195
Group Condition EFB2_00191 EFB2_00192 EFB2_00193 EFB2_00194 EFB2_00195
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. N.D. -0.1 -0.2 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. N.D. -0.1 +0.1 -0.2
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI N.D. N.D. -0.0 -0.0 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. N.D. -0.1 -0.0 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. N.D. -0.0 -0.1 +0.0
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae N.D. N.D. -0.1 +0.0 +0.0
no phage control BHIS_CaCl2 no phage control N.D. N.D. -0.1 -0.1 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae N.D. N.D. -0.0 +0.1 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae N.D. N.D. +0.0 +0.0 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) N.D. N.D. +0.1 -0.0 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. N.D. +0.1 +0.1 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community N.D. N.D. +0.1 +0.0 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. N.D. -0.0 +0.1 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae N.D. N.D. -0.0 +0.1 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community N.D. N.D. -0.1 +0.1 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. N.D. +0.0 +0.1 -0.1
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae N.D. N.D. -0.1 +0.0 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) N.D. N.D. +0.1 +0.1 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. N.D. -0.1 +0.1 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. N.D. +0.0 +0.1 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) N.D. N.D. -0.0 +0.0 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) N.D. N.D. +0.0 +0.1 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. N.D. +0.0 +0.1 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. N.D. +0.1 -0.1 +0.1
no phage control BHIS no phage control N.D. N.D. +0.0 +0.1 +0.1
mixed community no phage control BHIS no phage control with 14 member community N.D. N.D. +0.0 +0.1 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. N.D. +0.1 +0.0 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. N.D. +0.0 +0.0 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. N.D. +0.0 +0.1 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. N.D. +0.1 +0.1 +0.0
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