Fitness for 5 genes in Escherichia fergusonii Becca

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	EFB2_00183	EFB2_00184	EFB2_00185	EFB2_00186	EFB2_00187
mixed community no phage control	BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)	N.D.	-3.7	-1.4	-0.2	+0.0
mixed community no phage control	BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)	N.D.	-4.0	-0.9	-0.3	+0.2
mixed community no phage control	BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)	N.D.	-3.1	-1.3	-0.6	-0.1
mixed community no phage control	BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)	N.D.	-2.9	-1.2	-0.4	-0.2
mixed community no phage control	BHIS no phage control with 14 member community plus Klebsiella pneumoniae	N.D.	-2.8	-0.9	-0.0	-0.1
mixed community no phage control	BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)	N.D.	-3.5	-0.3	-0.3	+0.4
mixed community no phage control	BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)	N.D.	-2.5	-0.8	-0.2	-0.0
mixed community no phage control	BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)	N.D.	-2.9	-0.5	-0.1	+0.1
mixed community no phage control	BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)	N.D.	-2.6	-0.7	-0.1	+0.1
mixed community no phage control	BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)	N.D.	-2.1	-0.4	-0.7	+0.2
mixed community no phage control	BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)	N.D.	-2.4	-0.9	+0.3	-0.0
mixed community no phage control	BHIS no phage control with 14 member community	N.D.	-2.2	-0.3	-0.5	+0.1
mixed community no phage control	BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)	N.D.	-2.6	-0.1	-0.2	+0.1
mixed community no phage control	BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)	N.D.	-1.6	-0.7	-0.2	-0.0
mixed community no phage control	BHIS no phage control with 14 member community	N.D.	-2.3	-0.1	+0.1	-0.1
mixed community no phage control	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)	N.D.	-1.5	-0.6	-0.4	-0.0
mixed community no phage control	BHIS no phage control with 14 member community plus Klebsiella pneumoniae	N.D.	-1.4	-0.4	-0.2	-0.2
mixed community no phage control	BHIS no phage control with 14 member community plus Klebsiella pneumoniae	N.D.	-1.5	-0.3	-0.4	-0.1
phage mixed community	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)	N.D.	-2.2	-0.3	+0.1	+0.3
mixed community no phage control	BHIS no phage control with 14 member community	N.D.	-1.8	-0.2	+0.1	-0.1
mixed community no phage control	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)	N.D.	-2.6	+0.0	+0.5	+0.2
mixed community no phage control	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)	N.D.	-1.9	+0.2	-0.3	+0.2
mixed community no phage control	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)	N.D.	-1.8	-0.1	+0.1	+0.3
mixed community no phage control	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)	N.D.	-1.8	-0.0	-0.1	+0.5
phage mixed community	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)	N.D.	-1.3	+0.1	-0.4	+0.5
phage mixed community	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)	N.D.	-1.6	+0.3	+0.1	+0.3
mixed community no phage control	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)	N.D.	-1.4	+0.1	+0.1	+0.6
phage mixed community	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)	N.D.	-1.2	+0.8	+0.1	+0.4
phage mixed community	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)	N.D.	-1.3	+0.4	+0.6	+0.4
no phage control	BHIS_CaCl2 no phage control	N.D.	+4.9	+7.2	-2.9	+0.3