Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_00180 and EFB2_00181 are separated by 412 nucleotidesEFB2_00181 and EFB2_00182 overlap by 4 nucleotidesEFB2_00182 and EFB2_00183 overlap by 8 nucleotidesEFB2_00183 and EFB2_00184 are separated by 15 nucleotides EFB2_00180: EFB2_00180 - 3-deoxy-D-manno-octulosonic acid transferase, at 168,739 to 170,016 _00180 EFB2_00181: EFB2_00181 - Lipopolysaccharide core heptosyltransferase RfaQ, at 170,429 to 171,487 _00181 EFB2_00182: EFB2_00182 - Lipopolysaccharide core biosynthesis protein RfaG, at 171,484 to 172,608 _00182 EFB2_00183: EFB2_00183 - Lipopolysaccharide core heptose(I) kinase RfaP, at 172,601 to 173,398 _00183 EFB2_00184: EFB2_00184 - hypothetical protein, at 173,414 to 174,430 _00184
Group Condition EFB2_00180 EFB2_00181 EFB2_00182 EFB2_00183 EFB2_00184
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. -0.4 -2.6 N.D. -4.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) N.D. -0.2 -2.8 N.D. -3.7
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) N.D. -0.4 -2.9 N.D. -3.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. -0.4 -2.4 N.D. -3.5
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) N.D. -0.3 -2.9 N.D. -2.9
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) N.D. -0.4 -3.2 N.D. -2.6
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. -0.6 -2.5 N.D. -2.9
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae N.D. -0.3 -2.9 N.D. -2.8
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. -0.4 -2.9 N.D. -2.6
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. -0.5 -2.7 N.D. -2.5
mixed community no phage control BHIS no phage control with 14 member community N.D. -0.8 -2.5 N.D. -2.3
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. -0.4 -2.7 N.D. -2.4
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. -0.7 -2.2 N.D. -2.6
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) N.D. -0.0 -3.0 N.D. -2.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. -0.6 -2.6 N.D. -2.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. -0.3 -2.9 N.D. -1.9
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. -0.4 -3.1 N.D. -1.4
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) N.D. -0.3 -3.1 N.D. -1.4
mixed community no phage control BHIS no phage control with 14 member community N.D. -0.6 -2.4 N.D. -1.8
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae N.D. -0.4 -2.8 N.D. -1.5
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) N.D. -0.1 -3.0 N.D. -1.6
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae N.D. -0.4 -2.9 N.D. -1.4
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) N.D. -0.5 -2.4 N.D. -1.8
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. -0.3 -2.6 N.D. -1.6
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. -0.8 -2.5 N.D. -1.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. -0.4 -2.9 N.D. -1.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. -0.1 -3.1 N.D. -1.2
mixed community no phage control BHIS no phage control with 14 member community N.D. -0.4 -1.9 N.D. -2.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. -0.3 -2.8 N.D. -1.4
no phage control BHIS_CaCl2 no phage control N.D. -2.2 +2.9 N.D. +4.9
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EFB2_00180
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EFB2_00184
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