Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_00145 and EFB2_00146 are separated by 231 nucleotidesEFB2_00146 and EFB2_00147 are separated by 252 nucleotidesEFB2_00147 and EFB2_00148 are separated by 578 nucleotidesEFB2_00148 and EFB2_00149 are separated by 722 nucleotides EFB2_00145: EFB2_00145 - hypothetical protein, at 143,107 to 143,394 _00145 EFB2_00146: EFB2_00146 - hypothetical protein, at 143,626 to 143,817 _00146 EFB2_00147: EFB2_00147 - hypothetical protein, at 144,070 to 144,255 _00147 EFB2_00148: EFB2_00148 - hypothetical protein, at 144,834 to 144,935 _00148 EFB2_00149: EFB2_00149 - hypothetical protein, at 145,658 to 147,763 _00149
Group Condition EFB2_00145 EFB2_00146 EFB2_00147 EFB2_00148 EFB2_00149
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.0 -0.3 -0.2 -0.6 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 -0.4 -0.3 -0.0 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 -0.1 -0.3 -0.1 -0.0
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.2 -0.6 -0.2 -0.1 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 -0.4 -0.0 -0.2 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.0 -0.3 -0.0 -0.1 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae +0.1 -0.2 -0.1 -0.2 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.2 +0.1 -0.4 +0.0 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.2 -0.0 -0.2 +0.0 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae +0.0 +0.1 -0.1 -0.2 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.0 -0.5 +0.1 +0.0 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 +0.1 -0.3 -0.1 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae +0.1 -0.2 -0.2 -0.0 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.0 +0.0 +0.1 -0.4 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 -0.1 +0.2 -0.4 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.2 -0.2 -0.2 -0.1 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.2 -0.3 -0.2 +0.1 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 -0.1 +0.0 -0.3 -0.0
no phage control BHIS_CaCl2 no phage control -0.2 -0.4 +0.0 +0.3 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 +0.1 -0.2 -0.1 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -0.1 +0.3 -0.1 -0.1 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae +0.0 -0.2 +0.1 +0.0 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.0 -0.2 +0.1 +0.1 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.2 +0.1 +0.2 +0.0 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.2 -0.1 +0.1 -0.2 -0.1
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI -0.1 +0.2 +0.2 -0.1 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.2 -0.2 +0.2 -0.0 -0.0
no phage control BHIS no phage control -0.2 +0.2 +0.2 +0.1 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.3 -0.2 +0.1 +0.1 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 -0.1 +0.4 +0.1 -0.0
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