Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_00089 and EFB2_00090 overlap by 13 nucleotidesEFB2_00090 and EFB2_00091 are separated by 4 nucleotidesEFB2_00091 and EFB2_00092 are separated by 19 nucleotidesEFB2_00092 and EFB2_00093 are separated by 1048 nucleotides EFB2_00089: EFB2_00089 - putative outer membrane usher protein ElfC, at 80,556 to 83,063 _00089 EFB2_00090: EFB2_00090 - hypothetical protein, at 83,051 to 83,503 _00090 EFB2_00091: EFB2_00091 - hypothetical protein, at 83,508 to 84,041 _00091 EFB2_00092: EFB2_00092 - hypothetical protein, at 84,061 to 85,326 _00092 EFB2_00093: EFB2_00093 - Manganese import ATP-binding protein ScaC, at 86,375 to 87,094 _00093
Group Condition EFB2_00089 EFB2_00090 EFB2_00091 EFB2_00092 EFB2_00093
no phage control BHIS_CaCl2 no phage control +0.1 -0.0 -1.3 -0.1 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.0 -0.1 -0.6 -0.1 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.0 -0.2 -0.5 -0.1 -0.0
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI +0.0 -0.2 -0.5 +0.0 -0.1
no phage control BHIS_CaCl2 no phage control -0.0 +0.0 -0.6 -0.1 -0.1
mixed community no phage control BHIS no phage control with 14 member community +0.0 -0.2 -0.4 -0.0 -0.1
no phage control BHIS no phage control +0.0 -0.2 -0.3 -0.1 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -0.0 -0.3 -0.2 +0.0 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.0 -0.1 -0.3 -0.0 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.0 -0.2 -0.4 -0.0 +0.1
no phage control BHIS no phage control -0.0 +0.1 -0.5 -0.0 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -0.0 -0.2 -0.2 +0.0 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.0 -0.0 -0.4 -0.1 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.0 -0.0 -0.5 -0.0 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.0 -0.0 -0.6 +0.1 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 -0.1 -0.4 +0.0 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.0 +0.0 -0.4 +0.0 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.0 +0.1 -0.3 -0.1 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 +0.1 -0.4 +0.0 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.0 +0.0 -0.3 +0.1 +0.0
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI -0.0 +0.1 -0.3 +0.0 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.0 -0.1 -0.2 +0.0 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae -0.0 -0.1 +0.3 -0.1 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae +0.0 -0.1 +0.3 +0.0 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.0 +0.1 +0.2 -0.2 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.0 -0.1 +0.3 -0.0 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 -0.2 +0.4 +0.0 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 +0.1 +0.4 -0.0 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.0 -0.0 +0.4 +0.1 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 +0.2 +0.2 +0.1 +0.2
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