Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_00007 and EFB2_00008 are separated by 278 nucleotidesEFB2_00008 and EFB2_00009 overlap by 4 nucleotidesEFB2_00009 and EFB2_00010 overlap by 17 nucleotidesEFB2_00010 and EFB2_00011 overlap by 4 nucleotides EFB2_00007: EFB2_00007 - hypothetical protein, at 7,634 to 8,290 _00007 EFB2_00008: EFB2_00008 - HTH-type transcriptional regulator LutR, at 8,569 to 9,258 _00008 EFB2_00009: EFB2_00009 - putative 2-dehydro-3-deoxygalactonokinase DgoK1, at 9,255 to 10,133 _00009 EFB2_00010: EFB2_00010 - 2-dehydro-3-deoxy-6-phosphogalactonate aldolase, at 10,117 to 10,734 _00010 EFB2_00011: EFB2_00011 - D-galactonate dehydratase, at 10,731 to 11,879 _00011
Group Condition EFB2_00007 EFB2_00008 EFB2_00009 EFB2_00010 EFB2_00011
no phage control BHIS_CaCl2 no phage control -0.2 -0.1 -0.3 +0.2 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.0 -0.1 +0.1 -0.2 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 -0.1 -0.1 -0.1 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 +0.1 -0.0 -0.2 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 -0.1 -0.1 -0.1 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.0 -0.3 -0.0 +0.2 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.1 -0.0 +0.1 -0.2 +0.2
no phage control BHIS no phage control +0.0 -0.1 -0.0 +0.1 +0.1
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI +0.1 +0.2 -0.2 +0.0 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae -0.0 +0.2 +0.1 -0.0 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.0 +0.2 +0.0 +0.1 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.0 +0.2 +0.1 -0.1 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 -0.0 -0.1 +0.2 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.1 +0.1 -0.0 +0.0 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 +0.1 -0.0 +0.1 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae +0.1 +0.2 -0.0 +0.1 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 +0.2 -0.0 +0.1 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 +0.2 -0.0 +0.0 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae +0.2 +0.2 +0.0 -0.0 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.0 +0.3 -0.1 +0.2 +0.1
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.1 +0.1 -0.1 +0.2 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.0 +0.1 +0.2 +0.0 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 +0.2 -0.1 +0.2 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.2 +0.3 +0.0 +0.1 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 +0.2 +0.2 -0.0 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae +0.0 +0.1 +0.0 +0.2 +0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.2 +0.2 +0.1 +0.1 +0.0
mixed community no phage control BHIS no phage control with 14 member community +0.1 +0.3 +0.1 -0.1 +0.2
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.0 +0.2 +0.1 +0.2 +0.1
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.1 +0.2 +0.1 +0.1 +0.2
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EFB2_00007
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EFB2_00008
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EFB2_00010
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EFB2_00011
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