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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli BL21
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ECD_03950 and ECD_03951 are separated by 93 nucleotides
ECD_03951 and ECD_03952 are separated by 197 nucleotides
ECD_03952 and ECD_03953 overlap by 4 nucleotides
ECD_03953 and ECD_03954 overlap by 1 nucleotides
ECD_03950: ECD_03950 - Sel1 family TPR-like repeat protein, at 4,203,623 to 4,204,312
_03950
ECD_03951: ECD_03951 - formate dehydrogenase-H, selenopolypeptide subunit, at 4,204,406 to 4,206,553
_03951
ECD_03952: ECD_03952 - outer membrane factor of efflux pump, at 4,206,751 to 4,208,217
_03952
ECD_03953: ECD_03953 - membrane translocase (MDR) of MdtNOP efflux pump, PET family, at 4,208,214 to 4,210,265
_03953
ECD_03954: ECD_03954 - membrane fusion protein of efflux pump, at 4,210,265 to 4,211,296
_03954
Group
Condition
ECD
_03950
ECD
_03951
ECD
_03952
ECD
_03953
ECD
_03954
no phage control
Control_TnN
-0.5
+0.0
-0.2
+0.1
+0.0
phage
EV116
-0.5
+0.0
-0.3
+0.1
-0.0
phage
Laval1257
-0.5
-0.2
+0.1
+0.4
-0.2
phage
Ste04
-0.4
+0.1
-0.1
-0.0
-0.0
lb_plus_sm_buffer
NoPhageControl
+0.2
-0.1
-0.2
-0.1
-0.1
phage
N4
-0.5
+0.1
+0.1
+0.0
-0.0
phage
Bas32
-0.2
-0.1
-0.1
+0.1
+0.1
phage
Bas27
-0.2
+0.1
+0.0
+0.1
-0.2
lb_plus_sm_buffer
NophageControl
-0.5
+0.1
-0.0
+0.1
+0.1
no phage control
Control_TnJ
-0.2
+0.1
+0.1
+0.0
-0.2
phage
Bas51
-0.3
-0.0
+0.0
-0.1
+0.3
phage
EV152
-0.1
+0.0
+0.1
+0.1
-0.2
balo
Mixed culture, Bdellovibrio bacteriovorus HD100_10
-0.3
-0.0
-0.0
-0.0
+0.2
nophagecontrol
NoPhageControl
+0.2
-0.0
-0.2
-0.2
+0.2
phage
Laval1374
+0.1
-0.1
+0.2
-0.1
-0.1
phage
Bas33
+0.4
+0.0
-0.1
+0.1
-0.1
phage
Ox4
-0.2
-0.0
+0.1
+0.1
+0.3
phage
Bas51
-0.0
+0.1
+0.1
-0.1
+0.2
phage
Bas24
+0.4
+0.0
+0.2
+0.0
-0.2
phage
Bas27
+0.4
-0.1
+0.1
+0.0
-0.0
no phage control
Control_TnA
+0.3
+0.2
-0.1
+0.1
+0.0
phage
EV116
+0.2
+0.0
+0.0
+0.3
-0.1
phage
Bas58
+0.2
-0.0
+0.2
+0.0
+0.2
balo
Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1
+0.3
+0.1
+0.1
+0.1
+0.1
phage
Bas28
+0.5
+0.0
-0.0
+0.0
+0.1
phage
HSDP3
+0.4
+0.1
-0.0
+0.2
-0.0
phage
lambda1857_phage_12.5_MOI
+0.6
-0.0
+0.1
-0.1
+0.2
phage
Bas06
+0.6
-0.0
+0.1
+0.1
+0.2
phage
P2_phage_0.5625_MOI
+0.5
+0.3
+0.4
+0.1
-0.4
phage
CM1
+0.3
+0.2
+0.1
-0.1
+0.6
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