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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli BL21
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ECD_03941 and ECD_03942 are separated by 392 nucleotides
ECD_03942 and ECD_03943 are separated by 44 nucleotides
ECD_03943 and ECD_03944 overlap by 4 nucleotides
ECD_03944 and ECD_03945 overlap by 4 nucleotides
ECD_03941: ECD_03941 - acetyl-CoA synthetase, at 4,192,825 to 4,194,783
_03941
ECD_03942: ECD_03942 - nitrite reductase, formate-dependent, cytochrome, at 4,195,176 to 4,196,612
_03942
ECD_03943: ECD_03943 - nitrite reductase, formate-dependent, penta-heme cytochrome c, at 4,196,657 to 4,197,223
_03943
ECD_03944: ECD_03944 - formate-dependent nitrite reductase, 4Fe4S subunit, at 4,197,220 to 4,197,891
_03944
ECD_03945: ECD_03945 - formate-dependent nitrite reductase, membrane subunit, at 4,197,888 to 4,198,844
_03945
Group
Condition
ECD
_03941
ECD
_03942
ECD
_03943
ECD
_03944
ECD
_03945
phage
lambda1857_phage_12.5_MOI
-0.0
+0.2
-0.2
-0.9
-0.1
phage
Laval1257
-0.1
-0.2
-0.2
-0.6
+0.1
phage
EV116
+0.1
+0.1
-0.4
-0.4
-0.3
phage
EV152
-0.1
-0.1
+0.1
-0.6
-0.0
phage
K25
-0.0
-0.1
-0.2
-0.4
+0.2
phage
EV116
+0.2
-0.1
+0.0
-0.2
-0.3
phage
Laval1267
+0.0
+0.1
+0.2
-0.6
+0.0
phage
Bas26
-0.1
-0.2
-0.2
+0.3
-0.1
phage
JK16
+0.1
-0.1
-0.0
-0.3
+0.2
balo
Mixed culture, Bdellovibrio bacteriovorus HD100_10
-0.1
-0.0
+0.2
-0.4
+0.3
phage
Bas32
-0.0
+0.1
-0.3
+0.3
+0.0
phage
Bas30
-0.2
-0.2
+0.1
+0.4
-0.0
phage
Bas52
+0.1
+0.3
-0.1
-0.4
+0.2
lb_plus_sm_buffer
NophageControl
-0.1
+0.1
+0.3
-0.2
+0.0
phage
CM1
-0.1
+0.1
+0.2
+0.3
-0.4
phage
Ox4
-0.1
+0.1
-0.1
+0.6
-0.2
phage
Bas48
-0.0
+0.1
-0.1
+0.5
-0.1
balo
Mixed culture, Bdellovibrio bacteriovorus HD100_10
-0.1
-0.1
+0.0
+0.2
+0.3
phage
Laval1261
+0.0
+0.1
+0.4
-0.2
+0.1
phage
Laval1259
+0.1
-0.0
+0.1
+0.5
-0.1
phage
HSDP3
+0.2
+0.0
-0.1
+0.4
+0.1
phage
Bas14
+0.1
+0.1
+0.2
+0.3
-0.1
phage
Bas28
-0.1
+0.2
+0.1
+0.4
+0.1
phage
Bas58
+0.1
+0.1
+0.1
+0.4
+0.0
lb_plus_sm_buffer
NophageControl
-0.1
+0.1
+0.3
+0.5
+0.0
phage
Bas51
+0.1
+0.4
-0.1
+0.3
+0.2
balo
Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10
-0.1
-0.0
+0.1
+0.5
+0.4
balo
Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1
+0.0
+0.0
+0.2
+0.4
+0.2
balo
Mixed culture, Bdellovibrio bacteriovorus HD100_1
+0.0
+0.1
+0.3
+0.3
+0.3
phage
Bas50
+0.1
+0.1
-0.0
+1.0
+0.3
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