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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli BL21
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ECD_03559 and ECD_03560 overlap by 11 nucleotides
ECD_03560 and ECD_03561 are separated by 108 nucleotides
ECD_03561 and ECD_03562 are separated by 46 nucleotides
ECD_03562 and ECD_03563 overlap by 4 nucleotides
ECD_03559: ECD_03559 - inner membrane protein, at 3,743,974 to 3,744,336
_03559
ECD_03560: ECD_03560 - DUF202 family inner membrane protein, at 3,744,326 to 3,744,673
_03560
ECD_03561: ECD_03561 - inner membrane protein, at 3,744,782 to 3,745,231
_03561
ECD_03562: ECD_03562 - sulfatase/phosphatase superfamily protein, at 3,745,278 to 3,746,771
_03562
ECD_03563: ECD_03563 - putative transporter, at 3,746,768 to 3,748,483
_03563
Group
Condition
ECD
_03559
ECD
_03560
ECD
_03561
ECD
_03562
ECD
_03563
phage
Laval1261
+0.1
-0.3
-0.3
-0.3
-0.2
phage
lambda1857_phage_12.5_MOI
-0.2
-0.6
-0.1
+0.1
-0.2
phage
Laval1257
-0.4
+0.9
-0.5
-0.2
-0.6
balo
Mixed culture, Halobacteriovorax-10
-0.4
-0.3
-0.2
+0.1
+0.0
carbon source
Sodium-DL-Lactate
-0.2
-0.6
+0.0
-0.0
+0.0
carbon source
Sodium-DL-Lactate
-0.2
-0.5
+0.0
+0.0
+0.1
lb_plus_sm_buffer
NoPhageControl
-0.1
+0.1
-0.2
-0.2
-0.2
carbon source
Casamino-acids
-0.2
-0.2
-0.2
+0.1
+0.0
carbon source
L-Rhamnose
-0.3
-0.1
-0.1
+0.1
+0.1
carbon source
D-Glucose
-0.3
-0.3
+0.2
-0.1
+0.1
balo
Mixed culture, Halobacteriovorax-10
-0.2
-0.4
+0.0
+0.1
+0.1
nophagecontrol
NoPhageControl
+0.2
-0.4
-0.3
+0.1
+0.1
carbon source
D-Glucose
-0.2
-0.4
+0.3
-0.0
-0.1
phage
Ox4
+0.0
+0.1
-0.5
+0.0
+0.1
carbon source
Casamino-acids
-0.1
-0.3
+0.3
-0.1
+0.0
carbon source
L-Arabinose
-0.1
-0.5
+0.4
-0.0
+0.0
carbon source
L-Arabinose
-0.0
-0.5
+0.3
+0.1
+0.1
phage
EV116
+0.1
+0.5
-0.1
-0.2
+0.0
phage
Bas29
+0.1
+0.2
+0.1
-0.2
+0.2
phage
HSDP3
+0.1
-0.1
+0.4
-0.1
+0.1
phage
EV116
-0.2
+0.4
+0.1
+0.2
-0.1
phage
CM1
+0.1
-0.3
+0.3
+0.2
+0.2
phage
Laval1263
-0.2
+0.2
+0.4
+0.0
+0.0
phage
HSDP3
+0.0
-0.1
+0.4
+0.1
+0.2
balo
Mixed culture, Bdellovibrio bacteriovorus HD100_1
+0.2
+0.1
+0.1
+0.2
+0.1
balo
Mixed culture, Bdellovibrio bacteriovorus HD100_1
+0.2
+0.1
+0.2
+0.2
+0.1
phage
Bas52
-0.0
-0.1
+0.3
+0.4
+0.2
phage
EV152
+0.2
+0.5
+0.1
+0.2
+0.1
stress
Tailocin 256
+0.2
+1.0
-0.3
+0.1
+0.1
phage
Bas49
+0.8
+0.5
+0.3
+0.8
+1.0
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