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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli BL21
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ECD_03522 and ECD_03523 are separated by 53 nucleotides
ECD_03523 and ECD_03524 overlap by 154 nucleotides
ECD_03524 and ECD_03525 are separated by 116 nucleotides
ECD_03525 and ECD_03526 are separated by 84 nucleotides
ECD_03522: ECD_03522 - Single-strand binding protein (SSB) (Helix-destabilizing protein), at 3,712,806 to 3,713,291
_03522
ECD_03523: ECD_03523 - TrbC-like protein, at 3,713,345 to 3,714,508
_03523
ECD_03524: ECD_03524 - transposase, at 3,714,355 to 3,714,702
_03524
ECD_03525: ECD_03525 - hypothetical protein, at 3,714,819 to 3,715,157
_03525
ECD_03526: ECD_03526 - hypothetical protein, at 3,715,242 to 3,715,397
_03526
Group
Condition
ECD
_03522
ECD
_03523
ECD
_03524
ECD
_03525
ECD
_03526
phage
Bas24
-0.2
-0.1
-0.5
-0.2
-0.2
phage
Bas26
-0.3
-0.1
-0.2
+0.1
-0.2
no phage control
Control_TnJ
-0.4
+0.0
-0.5
+0.1
+0.0
lb_plus_sm_buffer
NophageControl
-0.4
-0.1
+0.2
-0.0
-0.3
phage
Bas27
-0.5
+0.2
+0.2
-0.3
-0.2
phage
Bas29
-0.3
+0.1
-0.1
-0.4
+0.2
phage
P2_phage_0.5625_MOI
-0.1
+0.5
-0.6
-0.3
-0.0
phage
EV116
-0.7
-0.0
+0.3
+0.1
-0.1
lb_plus_sm_buffer
NoPhageControl
+0.3
-0.0
+0.1
-0.4
-0.2
phage
CM1
-0.1
+0.1
-0.5
-0.0
+0.2
lb_plus_sm_buffer
NophageControl
-0.1
-0.1
-0.3
-0.0
+0.4
balo
Mixed culture, Bdellovibrio bacteriovorus HD100_10
-0.4
+0.1
-0.3
+0.0
+0.4
phage
Bas34
-0.2
-0.1
+0.1
-0.1
+0.3
no phage control
Control_TnA
+0.3
-0.2
-0.2
-0.2
+0.3
phage
lambda1857_phage_12.5_MOI
+0.4
+0.2
+1.1
-0.1
-1.4
lb_plus_sm_buffer
NophageControl
-0.2
+0.1
-0.1
+0.1
+0.4
phage
Bas32
+0.7
+0.1
+0.1
-0.3
-0.4
balo
Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10
-0.3
+0.2
-0.1
+0.1
+0.4
nophagecontrol
NoPhageControl
-0.7
+0.2
+0.1
+0.0
+0.7
phage
Bas14
-0.3
+0.1
+0.2
+0.1
+0.3
phage
Laval1261
-0.3
+0.0
+0.4
+0.2
+0.1
balo
Mixed culture, Bdellovibrio bacteriovorus HD100_10
-0.1
+0.2
-0.1
-0.0
+0.4
phage
Bas06
+0.4
-0.1
-0.0
+0.0
+0.2
balo
Mixed culture, Bdellovibrio bacteriovorus HD100_1
+0.2
+0.1
-0.1
-0.0
+0.5
balo
Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1
+0.3
+0.2
-0.0
+0.0
+0.3
balo
Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1
-0.1
+0.3
-0.1
-0.1
+0.8
phage
Ox4
+0.7
+0.0
+0.2
-0.1
+0.0
phage
Laval1261
-0.0
+0.2
+0.2
+0.0
+0.4
phage
Bas52
-0.0
+0.1
+0.4
+0.2
+0.3
phage
Laval1257
+1.6
+0.2
+0.1
+0.0
+0.0
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