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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli BL21
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ECD_03399 and ECD_03400 overlap by 4 nucleotides
ECD_03400 and ECD_03401 overlap by 32 nucleotides
ECD_03401 and ECD_03402 are separated by 152 nucleotides
ECD_03402 and ECD_03403 are separated by 103 nucleotides
ECD_03399: ECD_03399 - 3-methyl-adenine DNA glycosylase I, constitutive, at 3,575,246 to 3,575,809
_03399
ECD_03400: ECD_03400 - GNAT family putative N-acetyltransferase, at 3,575,806 to 3,576,246
_03400
ECD_03401: ECD_03401 - biotin sulfoxide reductase, at 3,576,215 to 3,578,548
_03401
ECD_03402: ECD_03402 - multicopy suppressor of bamB; outer membrane lipoprotein, at 3,578,701 to 3,579,360
_03402
ECD_03403: ECD_03403 - glyoxylate/hydroxypyruvate reductase B, at 3,579,464 to 3,580,438
_03403
Group
Condition
ECD
_03399
ECD
_03400
ECD
_03401
ECD
_03402
ECD
_03403
phage
EV116
-2.0
-0.5
-0.2
-0.3
+0.1
phage
lambda1857_phage_12.5_MOI
-0.7
-0.7
+0.2
-0.8
+0.3
phage
Laval1257
-0.2
-0.3
-0.3
-0.3
-0.2
phage
Bas24
-0.3
-0.5
+0.1
-0.3
+0.0
phage
Bas52
-0.2
-0.1
-0.1
-0.2
-0.5
phage
Bas52
+0.1
-0.3
-0.1
-0.2
-0.6
phage
EV152
-0.2
-0.1
-0.4
+0.0
-0.3
phage
HSDP3
-0.4
-0.1
+0.0
-0.1
-0.3
phage
Bas31
-0.1
-0.2
-0.1
-0.0
-0.3
phage
Bas29
-0.3
-0.2
-0.0
+0.2
-0.3
phage
Bas27
-0.1
-0.4
-0.0
+0.1
-0.2
phage
EV116
+0.0
-0.1
+0.1
+0.1
-0.8
phage
Ox4
+0.1
-0.2
+0.0
-0.3
-0.2
no phage control
Control_TnN
-0.3
+0.0
+0.1
-0.1
-0.3
lb_plus_sm_buffer
NoPhageControl
-0.4
-0.0
+0.1
+0.1
-0.2
phage
Bas28
+0.1
-0.2
-0.1
+0.1
-0.3
lb_plus_sm_buffer
NophageControl
+0.2
-0.2
-0.0
-0.2
-0.1
phage
Bas69
-0.6
+0.3
-0.0
+0.1
-0.0
phage
Bas50
-0.2
-0.4
+0.0
+0.1
+0.3
phage
Bas33
-0.2
-0.2
+0.1
-0.1
+0.2
phage
Bas51
+0.2
+0.0
+0.1
-0.5
-0.1
no phage control
Control_TnD
+0.2
-0.0
+0.2
-0.1
-0.3
balo
Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10
-0.3
+0.1
-0.1
+0.2
+0.3
no phage control
Control_TnJ
+0.3
-0.4
-0.0
-0.1
+0.5
balo
Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1
-0.3
-0.0
-0.0
+0.3
+0.4
lb_plus_sm_buffer
NophageControl
+0.4
+0.2
+0.0
+0.0
-0.2
phage
P2_phage_0.5625_MOI
+0.3
-0.0
+0.1
+0.0
+0.3
phage
CM1
+0.0
+0.1
+0.3
+0.1
+0.2
phage
Bas32
+0.3
-0.0
+0.1
+0.2
+0.3
phage
Bas30
+0.1
+0.1
+0.1
+0.2
+0.3
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