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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli BL21
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ECD_03223 and ECD_03224 overlap by 4 nucleotides
ECD_03224 and ECD_03225 are separated by 99 nucleotides
ECD_03225 and ECD_03227 are separated by 788 nucleotides
ECD_03227 and ECD_03228 overlap by 82 nucleotides
ECD_03223: ECD_03223 - fructoselysine 3-epimerase, at 3,361,941 to 3,362,771
_03223
ECD_03224: ECD_03224 - fructoselysine 6-kinase, at 3,362,768 to 3,363,553
_03224
ECD_03225: ECD_03225 - putative DNA-binding transcriptional regulator, at 3,363,653 to 3,364,384
_03225
ECD_03227: ECD_03227 - IS1 protein InsB, at 3,365,173 to 3,365,676
_03227
ECD_03228: ECD_03228 - IS1 protein InsA, at 3,365,595 to 3,365,870
_03228
Group
Condition
ECD
_03223
ECD
_03224
ECD
_03225
ECD
_03227
ECD
_03228
phage
Ox4
-0.2
-0.4
-0.3
N.D.
N.D.
phage
Laval1261
-0.1
+0.1
-0.9
N.D.
N.D.
balo
Mixed culture, Bdellovibrio bacteriovorus HD100_1
+0.2
-0.2
-0.8
N.D.
N.D.
phage
Bas30
-0.1
-0.1
-0.6
N.D.
N.D.
phage
Bas51
-0.4
-0.4
+0.0
N.D.
N.D.
phage
Bas18
+0.1
-0.1
-0.6
N.D.
N.D.
phage
Laval1257
-0.4
+0.0
-0.3
N.D.
N.D.
balo
Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10
+0.1
-0.1
-0.6
N.D.
N.D.
balo
Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1
+0.2
-0.2
-0.5
N.D.
N.D.
phage
P2_phage_0.5625_MOI
-0.0
+0.2
-0.8
N.D.
N.D.
balo
Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1
+0.1
-0.1
-0.5
N.D.
N.D.
balo
Mixed culture, Bdellovibrio bacteriovorus HD100_10
+0.2
-0.1
-0.6
N.D.
N.D.
lb_plus_sm_buffer
NoPhageControl
+0.1
-0.3
-0.3
N.D.
N.D.
phage
Bas51
-0.1
-0.4
-0.0
N.D.
N.D.
balo
Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10
+0.1
-0.2
-0.4
N.D.
N.D.
phage
Ox4
-0.2
+0.0
-0.3
N.D.
N.D.
balo
Mixed culture, Bdellovibrio bacteriovorus HD100_10
+0.1
-0.1
-0.4
N.D.
N.D.
phage
Bas52
-0.1
-0.3
+0.1
N.D.
N.D.
balo
Mixed culture, Halobacteriovorax-10
-0.1
+0.1
-0.3
N.D.
N.D.
balo
Mixed culture, Bdellovibrio bacteriovorus HD100_1
+0.2
+0.1
-0.5
N.D.
N.D.
phage
CM1
-0.2
-0.2
+0.2
N.D.
N.D.
no phage control
Control_TnN
-0.0
+0.2
-0.3
N.D.
N.D.
lb_plus_sm_buffer
NophageControl
+0.2
+0.1
-0.4
N.D.
N.D.
phage
Bas26
+0.1
+0.2
-0.3
N.D.
N.D.
nophagecontrol
NoPhageControl
+0.2
+0.1
-0.4
N.D.
N.D.
phage
CBA120
+0.1
+0.2
-0.3
N.D.
N.D.
phage
Bas24
-0.2
+0.2
+0.4
N.D.
N.D.
phage
EV116
+0.0
+0.2
+0.3
N.D.
N.D.
phage
EV116
+0.0
+0.3
+0.5
N.D.
N.D.
phage
EV152
-0.1
-0.2
+1.3
N.D.
N.D.
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