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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli BL21
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ECD_03021 and ECD_03022 are separated by 50 nucleotides
ECD_03022 and ECD_03023 overlap by 14 nucleotides
ECD_03023 and ECD_03024 overlap by 7 nucleotides
ECD_03024 and ECD_03025 are separated by 208 nucleotides
ECD_03021: ECD_03021 - UPF0306 family protein, at 3,167,971 to 3,168,414
_03021
ECD_03022: ECD_03022 - GIY-YIG nuclease superfamily protein, at 3,168,465 to 3,168,767
_03022
ECD_03023: ECD_03023 - GNAT family putative N-acetyltransferase, at 3,168,754 to 3,169,257
_03023
ECD_03024: ECD_03024 - SCP-2 sterol transfer family protein, at 3,169,251 to 3,169,775
_03024
ECD_03025: ECD_03025 - U32 peptidase family protein, at 3,169,984 to 3,170,979
_03025
Group
Condition
ECD
_03021
ECD
_03022
ECD
_03023
ECD
_03024
ECD
_03025
phage
P2_phage_0.5625_MOI
-3.1
-0.6
-0.5
+0.7
-0.5
phage
Bas52
-0.3
-0.4
-1.7
-0.0
-0.3
phage
CM1
-0.8
-0.8
-0.0
+0.2
-0.2
phage
Bas27
-0.6
-0.5
+0.2
-0.1
-0.1
phage
Bas51
-0.0
-0.3
-0.9
+0.4
-0.3
phage
Bas50
+0.2
-0.9
-0.2
-0.2
+0.0
phage
Bas34
-0.9
-0.1
+0.2
-0.2
+0.0
phage
Bas52
+0.5
-0.6
-0.8
+0.2
-0.2
balo
Mixed culture, Halobacteriovorax-1
-0.3
-0.7
+0.3
-0.2
+0.1
lb_plus_sm_buffer
NophageControl
-0.5
-0.5
+0.2
+0.3
+0.1
phage
HSDP3
-1.0
+0.6
+0.1
+0.1
-0.2
phage
Bas51
+0.3
-0.2
-0.4
+0.3
-0.2
balo
Mixed culture, Bdellovibrio bacteriovorus HD100_10
-1.0
+0.0
+0.6
+0.2
+0.2
phage
Bas29
-0.0
-0.7
+0.6
-0.1
+0.2
balo
Mixed culture, Bdellovibrio bacteriovorus HD100_1
-0.3
-0.6
+0.6
+0.1
+0.3
phage
EV152
+0.8
-0.3
-0.3
-0.3
+0.2
lb_plus_sm_buffer
NoPhageControl
+0.1
+0.7
-0.6
-0.1
-0.1
phage
Bas27
+0.5
-0.6
+0.3
+0.1
-0.1
phage
EV116
+1.0
+0.6
-0.5
+0.0
-0.6
phage
K25
-0.6
+0.6
+0.4
+0.1
+0.2
phage
N4
+0.7
-0.7
+0.7
-0.0
+0.1
no phage control
Control_TnJ
+0.1
+0.4
+0.7
-0.2
-0.1
phage
Bas32
+0.2
+0.6
+0.5
-0.2
+0.1
phage
EV116
+1.4
-0.5
-0.2
+0.3
+0.1
lb_plus_sm_buffer
NophageControl
+0.4
+0.4
+0.5
-0.3
+0.2
phage
Bas24
+1.0
+0.1
+0.3
+0.1
-0.1
phage
Bas14
+1.0
+0.7
-0.2
-0.2
+0.2
phage
K25
+0.7
+0.6
-0.1
+0.2
+0.2
phage
Laval1261
+0.4
+0.3
+0.9
-0.1
+0.1
balo
Mixed culture, Bdellovibrio bacteriovorus HD100_1
+0.5
+0.6
+0.5
+0.3
+0.4
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