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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli BL21
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ECD_00453 and ECD_00454 are separated by 68 nucleotides
ECD_00454 and ECD_00455 are separated by 229 nucleotides
ECD_00455 and ECD_00456 are separated by 77 nucleotides
ECD_00456 and ECD_00457 are separated by 89 nucleotides
ECD_00453: ECD_00453 - tRNA 2-selenouridine synthase, selenophosphate-dependent, at 499,277 to 500,371
_00453
ECD_00454: ECD_00454 - allD operon transcriptional activator, at 500,440 to 501,366
_00454
ECD_00455: ECD_00455 - ureidoglycolate lyase, releasing urea, at 501,596 to 502,078
_00455
ECD_00456: ECD_00456 - glyoxylate-inducible transcriptional repressor of all and gcl operons, at 502,156 to 502,971
_00456
ECD_00457: ECD_00457 - glyoxylate carboligase, at 503,061 to 504,842
_00457
Group
Condition
ECD
_00453
ECD
_00454
ECD
_00455
ECD
_00456
ECD
_00457
phage
Laval1257
-1.1
+0.5
-2.2
-0.6
-0.1
phage
K25
-0.3
-0.0
-0.8
-0.3
-0.0
phage
Bas18
+0.2
-0.4
-0.5
-0.1
-0.3
phage
Bas24
+0.3
-0.5
-1.4
+0.4
+0.2
phage
Bas50
-0.1
-1.0
+0.7
-0.3
+0.0
phage
Bas30
+0.1
-0.1
-0.3
-0.4
+0.3
phage
EV116
-0.4
+0.2
+0.1
+0.2
-0.4
nophagecontrol
NoPhageControl
+0.4
+0.2
-1.4
+0.9
+0.1
phage
Bas51
-0.3
+0.2
+0.4
+0.1
-0.1
phage
Bas29
-0.3
-0.1
+0.7
-0.1
+0.1
balo
Mixed culture, Bdellovibrio bacteriovorus HD100_10
+0.2
+0.4
-0.7
+0.8
-0.3
no phage control
Control_TnJ
+0.0
-0.3
+0.7
-0.2
+0.2
phage
Bas58
+0.3
-0.2
+0.4
+0.2
-0.1
phage
EV116
+0.4
-0.5
+0.5
+0.4
-0.0
phage
CBA120
+0.4
-0.2
+0.5
-0.0
+0.0
phage
Ste04
+0.3
+0.2
+0.5
-0.2
-0.0
phage
N4
+0.3
+0.2
+0.4
+0.1
-0.1
phage
HSDP3
+0.4
+0.2
+0.5
-0.1
+0.0
balo
Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10
+0.1
+0.3
-0.1
+0.9
-0.2
balo
Mixed culture, Bdellovibrio bacteriovorus HD100_1
+0.4
+0.3
-0.2
+0.9
-0.1
phage
Bas50
+0.2
+0.1
+0.8
-0.1
+0.2
phage
Bas51
+0.4
+0.2
+0.5
+0.3
-0.0
phage
Bas41
-0.0
+0.6
+0.6
+0.0
+0.2
balo
Mixed culture, Bdellovibrio bacteriovorus HD100_10
+0.3
+0.3
-0.1
+1.0
-0.1
balo
Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1
+0.1
+0.7
+0.2
+0.8
-0.2
phage
lambda1857_phage_12.5_MOI
-0.2
+0.4
-0.0
+1.5
-0.0
balo
Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10
+0.2
+0.6
+0.3
+0.8
-0.1
phage
P2_phage_0.5625_MOI
+0.4
+1.1
-1.0
+1.0
+0.3
balo
Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1
+0.4
+0.4
+0.1
+1.1
-0.1
balo
Mixed culture, Bdellovibrio bacteriovorus HD100_1
+0.4
+0.7
+0.3
+1.0
-0.1
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