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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli BL21
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ECD_00333 and ECD_00334 are separated by 119 nucleotides
ECD_00334 and ECD_00335 are separated by 182 nucleotides
ECD_00335 and ECD_00336 are separated by 49 nucleotides
ECD_00336 and ECD_00337 are separated by 257 nucleotides
ECD_00333: ECD_00333 - pyrroline-5-carboxylate reductase, NAD(P)-binding, at 369,460 to 370,269
_00333
ECD_00334: ECD_00334 - UPF0178 family protein, at 370,389 to 370,847
_00334
ECD_00335: ECD_00335 - shikimate kinase II, at 371,030 to 371,554
_00335
ECD_00336: ECD_00336 - OxyR-regulated conserved protein, at 371,604 to 371,795
_00336
ECD_00337: ECD_00337 - AroM family protein, at 372,053 to 372,730
_00337
Group
Condition
ECD
_00333
ECD
_00334
ECD
_00335
ECD
_00336
ECD
_00337
balo
Mixed culture, Halobacteriovorax-10
-2.4
+0.1
-0.0
-0.2
+0.1
phage
EV116
-3.7
-0.2
+1.4
+0.4
-0.1
phage
Bas63
-1.2
+0.2
-0.7
+0.0
-0.5
phage
Bas14
-1.5
+0.1
-0.2
-0.4
-0.1
phage
EV116
-3.3
-0.8
+1.5
+0.3
+0.1
phage
Bas26
-0.7
-0.2
-0.6
-0.2
-0.2
phage
P2_phage_0.5625_MOI
-0.3
+0.6
-1.9
+0.3
-0.8
phage
Bas28
-1.3
+0.0
-0.1
-0.0
-0.4
balo
Mixed culture, Halobacteriovorax-10
-2.1
-0.0
+0.3
-0.0
-0.0
phage
Bas27
-1.3
+0.1
-0.8
+0.2
-0.0
phage
Bas14
-1.3
+0.2
-0.6
-0.1
-0.1
balo
Mixed culture, Halobacteriovorax-1
-1.9
+0.0
-0.0
-0.1
+0.1
phage
Bas34
-1.3
+0.0
+0.1
-0.0
-0.6
phage
Bas29
-1.6
+0.2
+0.3
-0.2
-0.4
nophagecontrol
NoPhageControl
-0.6
+0.3
-1.1
+0.2
-0.4
phage
Bas50
-0.1
-0.4
-1.1
-0.3
+0.3
phage
Bas31
-1.2
+0.3
-0.6
+0.0
-0.0
balo
Mixed culture, Halobacteriovorax-1
-1.7
+0.2
+0.3
+0.1
+0.1
phage
EV152
-1.3
-0.1
+0.5
-0.1
+0.1
no phage control
Control_TnJ
-0.9
-0.3
+0.4
+0.1
-0.2
lb_plus_sm_buffer
NoPhageControl
-0.9
-0.2
-0.2
+0.3
+0.4
phage
EV152
-1.0
+0.1
+0.7
-0.1
-0.2
balo
Mixed culture, Bdellovibrio bacteriovorus HD100_10
-0.3
+0.1
+1.0
+0.1
-0.8
balo
Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1
+0.1
-0.2
+1.0
-0.1
-0.6
balo
Mixed culture, Bdellovibrio bacteriovorus HD100_10
-0.2
+0.2
+1.1
-0.2
-0.5
phage
Laval1257
+0.7
+0.1
-0.8
+0.6
+0.1
balo
Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1
-0.1
+0.4
+1.3
-0.2
+0.1
phage
Bas51
+0.5
+0.3
+1.6
+0.3
-0.1
phage
Bas51
+0.7
+0.4
+1.4
+0.0
+0.2
phage
CM1
+0.9
+0.6
+1.6
+0.4
+0.1
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