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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli BL21
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ECD_00304 and ECD_00305 overlap by 4 nucleotides
ECD_00305 and ECD_00306 overlap by 4 nucleotides
ECD_00306 and ECD_00307 are separated by 377 nucleotides
ECD_00307 and ECD_00308 are separated by 101 nucleotides
ECD_00304: ECD_00304 - 2-keto-4-pentenoate hydratase, at 341,650 to 342,459
_00304
ECD_00305: ECD_00305 - acetaldehyde-CoA dehydrogenase II, NAD-binding, at 342,456 to 343,406
_00305
ECD_00306: ECD_00306 - 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase, class I, at 343,403 to 344,416
_00306
ECD_00307: ECD_00307 - 3-hydroxyphenylpropionic transporter, at 344,794 to 346,005
_00307
ECD_00308: ECD_00308 - DUF2058 family protein, at 346,107 to 346,646
_00308
Group
Condition
ECD
_00304
ECD
_00305
ECD
_00306
ECD
_00307
ECD
_00308
phage
EV116
-0.6
-0.2
+0.0
-0.3
-0.2
phage
Laval1257
-0.4
-0.1
-0.2
-0.1
-0.3
phage
Bas52
-0.2
-0.2
+0.2
-0.3
-0.4
phage
Bas69
-0.3
+0.0
-0.1
-0.2
-0.3
phage
Bas24
+0.0
+0.0
-0.4
+0.2
-0.5
phage
HSDP3
-0.2
+0.2
-0.1
+0.2
-0.4
phage
CM1
+0.1
+0.1
-0.5
-0.1
-0.0
phage
Laval1263
-0.2
-0.1
+0.3
-0.1
-0.2
phage
EV152
-0.1
-0.1
-0.2
-0.2
+0.3
no phage control
Control_TnJ
+0.1
-0.1
+0.1
+0.1
-0.4
phage
lambda1857_phage_12.5_MOI
-0.5
+0.1
+0.4
+0.1
-0.2
phage
Bas63
-0.2
-0.1
+0.4
-0.1
-0.2
no phage control
Control_TnA
-0.4
+0.1
-0.2
+0.2
+0.3
phage
Laval1267
+0.2
-0.0
+0.1
-0.4
+0.2
balo
Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10
-0.4
-0.2
+0.4
+0.4
-0.0
phage
EV116
+0.1
-0.0
-0.3
+0.1
+0.2
balo
Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1
-0.2
-0.1
+0.2
+0.3
-0.1
lb_plus_sm_buffer
NoPhageControl
-0.1
-0.1
+0.5
+0.2
-0.2
phage
Bas51
-0.3
+0.1
+0.6
-0.2
-0.0
phage
K25
+0.3
-0.4
+0.2
+0.1
+0.2
phage
Laval1261
-0.3
+0.1
+0.0
+0.2
+0.2
phage
Ox4
+0.4
-0.1
-0.0
+0.2
-0.1
balo
Mixed culture, Bdellovibrio bacteriovorus HD100_1
-0.4
-0.2
+0.2
+0.5
+0.4
balo
Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10
-0.2
-0.2
+0.3
+0.5
+0.1
balo
Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1
-0.2
-0.0
+0.3
+0.4
+0.2
balo
Mixed culture, Bdellovibrio bacteriovorus HD100_10
-0.3
-0.2
+0.6
+0.4
+0.3
balo
Mixed culture, Bdellovibrio bacteriovorus HD100_1
-0.2
-0.2
+0.4
+0.4
+0.3
phage
P2_phage_0.5625_MOI
+0.4
+0.6
-0.1
+0.2
-0.0
balo
Mixed culture, Bdellovibrio bacteriovorus HD100_10
-0.2
+0.0
+0.6
+0.4
+0.3
nophagecontrol
NoPhageControl
+0.0
+0.5
+0.5
+0.5
-0.1
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