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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli BL21
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ECD_00063 and ECD_00064 are separated by 284 nucleotides
ECD_00064 and ECD_00065 are separated by 10 nucleotides
ECD_00065 and ECD_00066 are separated by 338 nucleotides
ECD_00066 and ECD_00067 are separated by 85 nucleotides
ECD_00063: ECD_00063 - L-ribulose-5-phosphate 4-epimerase, at 68,660 to 69,355
_00063
ECD_00064: ECD_00064 - L-arabinose isomerase, at 69,640 to 71,142
_00064
ECD_00065: ECD_00065 - L-ribulokinase, at 71,153 to 72,853
_00065
ECD_00066: ECD_00066 - ara regulon transcriptional activator; autorepressor, at 73,192 to 74,070
_00066
ECD_00067: ECD_00067 - DedA family inner membrane protein, at 74,156 to 74,920
_00067
Group
Condition
ECD
_00063
ECD
_00064
ECD
_00065
ECD
_00066
ECD
_00067
phage
Laval1257
-0.7
-0.3
-0.3
-0.4
+0.1
phage
EV116
+0.1
-0.3
-0.3
-0.4
-0.5
phage
lambda1857_phage_12.5_MOI
-0.1
-0.5
-0.5
-0.0
-0.2
phage
EV152
-0.1
-0.2
-0.2
-0.1
-0.6
phage
Bas30
-0.1
-0.3
-0.2
-0.2
-0.3
phage
Bas32
-0.2
-0.3
-0.0
-0.2
-0.2
phage
EV152
-0.1
+0.1
+0.2
+0.0
-0.7
no phage control
Control_TnJ
-0.3
-0.0
+0.1
+0.2
-0.5
phage
EV116
+0.1
-0.3
-0.0
+0.3
-0.5
phage
Bas50
+0.2
+0.2
-0.2
-0.0
-0.4
phage
Bas34
-0.2
-0.1
-0.3
+0.1
+0.2
phage
Bas26
-0.1
-0.3
+0.4
+0.3
-0.3
phage
Laval1259
-0.0
+0.1
-0.4
+0.1
+0.6
phage
P2_phage_0.5625_MOI
+0.6
-0.0
+0.1
+1.0
-1.2
phage
Ox4
-0.2
-0.1
+0.0
+0.2
+0.7
nophagecontrol
NoPhageControl
-0.2
+0.6
+0.1
+0.3
-0.0
phage
Ox4
-0.1
-0.2
-0.1
+0.1
+1.0
phage
Bas51
+0.1
-0.3
+0.2
+0.1
+1.4
phage
CM1
+0.3
+0.1
-0.4
-0.1
+1.6
phage
Bas51
-0.1
+0.0
+0.2
+0.1
+1.3
phage
Bas52
+0.1
+0.2
+0.1
+0.3
+1.1
balo
Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10
+0.3
+0.2
+0.3
+0.6
+0.4
balo
Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10
+0.6
+0.2
+0.5
+0.5
+0.3
balo
Mixed culture, Bdellovibrio bacteriovorus HD100_10
+0.3
+0.2
+0.4
+0.6
+0.7
balo
Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1
+0.4
+0.3
+0.4
+0.5
+0.6
phage
Bas52
+0.2
+0.2
+0.3
+0.4
+1.1
balo
Mixed culture, Bdellovibrio bacteriovorus HD100_1
+0.6
+0.1
+0.4
+0.6
+0.6
balo
Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1
+0.3
+0.2
+0.5
+0.6
+0.8
balo
Mixed culture, Bdellovibrio bacteriovorus HD100_10
+0.5
+0.2
+0.6
+0.7
+0.5
balo
Mixed culture, Bdellovibrio bacteriovorus HD100_1
+0.7
+0.2
+0.3
+0.7
+0.8
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