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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola ME23
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500 nt
DZA65_RS10290 and DZA65_RS10295 are separated by 18 nucleotides
DZA65_RS10295 and DZA65_RS22865 are separated by 182 nucleotides
DZA65_RS22865 and DZA65_RS10305 overlap by 8 nucleotides
DZA65_RS10305 and DZA65_RS10310 are separated by 547 nucleotides
DZA65_RS10290: DZA65_RS10290 - carbon-nitrogen hydrolase family protein, at 2,178,459 to 2,179,385
_RS10290
DZA65_RS10295: DZA65_RS10295 - hypothetical protein, at 2,179,404 to 2,179,823
_RS10295
DZA65_RS22865: DZA65_RS22865 - hypothetical protein, at 2,180,006 to 2,180,449
_RS22865
DZA65_RS10305: DZA65_RS10305 - ATP-binding protein, at 2,180,442 to 2,181,773
_RS10305
DZA65_RS10310: DZA65_RS10310 - tRNA-Ser, at 2,182,321 to 2,182,410
_RS10310
Group
Condition
DZA65
_RS10290
DZA65
_RS10295
DZA65
_RS22865
DZA65
_RS10305
DZA65
_RS10310
control
PDB
-0.0
-0.1
-0.4
-1.5
N.D.
plant
Stem-Upstate
-0.1
-0.2
-0.8
-0.9
N.D.
control
PDB
+0.0
-0.1
-0.1
-1.3
N.D.
plant
Stem-Upstate
-0.0
+0.1
-0.5
-1.0
N.D.
plant
Stem-Upstate
-0.2
+0.1
-0.5
-0.7
N.D.
plant
Stem-Norland
-0.3
-0.7
+0.1
-0.4
N.D.
plant
Stem-Upstate
-0.1
-0.7
+0.1
-0.7
N.D.
control
PDB
-0.2
-0.2
-0.3
-0.5
N.D.
stress
3.75mM_PTB
+0.1
+0.2
-0.1
-1.1
N.D.
stress
1.88mM_PTB
-0.0
+0.1
-0.6
-0.2
N.D.
plant
Stem-Norland
+0.2
-0.2
-0.6
-0.2
N.D.
carbon source
M9+glycerol
-0.3
-0.0
+0.1
-0.5
N.D.
plant
Stem-Upstate
-0.1
+0.4
-0.5
-0.4
N.D.
carbon source
M9+glycerol
-0.2
+0.2
+0.5
-1.0
N.D.
control
LB
-0.3
+0.3
+0.4
-0.9
N.D.
control
LB
-0.1
+0.3
-0.1
-0.5
N.D.
stress
1.88mM_PTB
+0.1
+0.1
+0.2
-0.6
N.D.
plant
Stem-Norland
-0.0
-0.4
-0.3
+0.6
N.D.
plant
Stem-Upstate
-0.2
-0.1
+0.8
-0.4
N.D.
carbon source
M9+polygalacturonate
+0.0
+0.1
-0.4
+0.5
N.D.
carbon source
M9+polygalacturonate
+0.2
+0.1
-0.5
+0.4
N.D.
control
LB
-0.1
+0.3
+0.5
-0.4
N.D.
control
LB
-0.1
+0.2
+0.5
-0.2
N.D.
plant
Upstate
+0.0
+0.2
-0.3
+0.8
N.D.
plant
Norland
+0.1
-0.1
+0.3
+0.4
N.D.
plant
Upstate
-0.1
+0.0
+0.6
+0.3
N.D.
plant
Stem-Atlantic
+0.0
-0.0
+0.2
+0.7
N.D.
carbon source
M9+polygalacturonate
+0.1
-0.1
+0.4
+0.7
N.D.
plant
Atlantic
+0.1
+0.1
+0.7
+0.4
N.D.
plant
Atlantic
-0.0
+0.5
+0.2
+0.9
N.D.
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