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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola ME23
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DZA65_RS22665 and DZA65_RS22670 are separated by 23 nucleotides
DZA65_RS22670 and DZA65_RS22680 are separated by 716 nucleotides
DZA65_RS22680 and DZA65_RS22685 are separated by 99 nucleotides
DZA65_RS22685 and DZA65_RS22690 are separated by 94 nucleotides
DZA65_RS22665: DZA65_RS22665 - helix-turn-helix domain-containing protein, at 4,901,224 to 4,901,490
_RS22665
DZA65_RS22670: DZA65_RS22670 - type II toxin-antitoxin system HipA family toxin, at 4,901,514 to 4,901,774
_RS22670
DZA65_RS22680: DZA65_RS22680 - TetR/AcrR family transcriptional regulator, at 4,902,491 to 4,903,093
_RS22680
DZA65_RS22685: DZA65_RS22685 - SDR family oxidoreductase, at 4,903,193 to 4,904,074
_RS22685
DZA65_RS22690: DZA65_RS22690 - IS3 family transposase, at 4,904,169 to 4,904,371
_RS22690
Group
Condition
DZA65
_RS22665
DZA65
_RS22670
DZA65
_RS22680
DZA65
_RS22685
DZA65
_RS22690
plant
Stem-Upstate
-0.5
-0.0
-0.0
+0.1
-1.8
plant
Stem-Upstate
+0.2
-0.8
-0.7
-0.1
+0.3
plant
Stem-Norland
-0.2
-0.0
+0.1
+0.1
-0.7
control
PDB
-0.2
-0.4
-0.2
-0.1
+0.1
carbon source
M9+starch
+0.1
-0.1
-0.2
+0.0
-0.5
plant
Atlantic
-0.5
+0.1
-0.3
+0.0
+0.1
plant
Upstate
+0.2
+0.1
-0.2
+0.1
-0.7
plant
Stem-Norland
+0.3
-0.8
-0.1
+0.1
-0.0
control
LB
+0.0
-0.2
-0.4
-0.1
+0.3
stress
3.75mM_PTB
-0.3
-0.3
-0.2
+0.1
+0.2
plant
Stem-Atlantic
-0.3
+0.3
-0.4
+0.1
-0.1
control
LB
+0.2
+0.2
-0.4
+0.1
-0.3
carbon source
M9+sucrose
+0.3
+0.2
+0.0
-0.0
-0.6
carbon source
M9+polygalacturonate
+0.2
+0.3
-0.3
+0.0
-0.3
carbon source
M9+sucrose
+0.3
+0.1
-0.2
+0.1
-0.4
plant
Stem-Norland
+0.6
-0.4
+0.2
+0.2
-0.6
control
LB
+0.1
-0.1
-0.4
+0.0
+0.3
plant
Stem-Norland
-0.4
+0.2
-0.2
+0.1
+0.4
plant
Stem-Norland
+0.1
-0.5
-0.1
-0.0
+0.6
carbon source
M9+sucrose
+0.5
+0.4
-0.2
+0.0
-0.6
plant
Stem-Atlantic
+0.5
-0.0
-0.1
+0.1
-0.2
carbon source
M9+glycerol
-0.1
+0.0
-0.2
-0.1
+0.6
plant
Stem-Atlantic
+0.5
+0.0
-0.2
+0.1
-0.2
plant
Stem-Upstate
-0.5
+0.4
-0.1
-0.1
+0.6
control
LB
-0.0
+0.4
-0.3
-0.0
+0.4
plant
Upstate
+0.6
-0.4
-0.2
-0.0
+0.6
plant
Stem-Atlantic
+0.7
-0.1
-0.2
+0.0
+0.3
stress
1.88mM_PTB
+0.3
-0.1
-0.2
+0.1
+0.6
plant
Stem-Norland
+0.0
+0.4
-0.1
+0.0
+0.4
plant
Stem-Upstate
+0.1
-0.1
+0.3
+0.0
+0.8
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