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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola ME23
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DZA65_RS22250 and DZA65_RS22255 are separated by 109 nucleotides
DZA65_RS22255 and DZA65_RS22260 overlap by 8 nucleotides
DZA65_RS22260 and DZA65_RS22265 are separated by 214 nucleotides
DZA65_RS22265 and DZA65_RS22270 are separated by 102 nucleotides
DZA65_RS22250: DZA65_RS22250 - YihD family protein, at 4,814,397 to 4,814,666
_RS22250
DZA65_RS22255: DZA65_RS22255 - molybdenum cofactor guanylyltransferase MobA, at 4,814,776 to 4,815,351
_RS22255
DZA65_RS22260: DZA65_RS22260 - molybdopterin-guanine dinucleotide biosynthesis protein B, at 4,815,344 to 4,815,871
_RS22260
DZA65_RS22265: DZA65_RS22265 - 5S ribosomal RNA, at 4,816,086 to 4,816,201
_RS22265
DZA65_RS22270: DZA65_RS22270 - 23S ribosomal RNA, at 4,816,304 to 4,819,327
_RS22270
Group
Condition
DZA65
_RS22250
DZA65
_RS22255
DZA65
_RS22260
DZA65
_RS22265
DZA65
_RS22270
plant
Stem-Upstate
+0.0
-1.9
-0.3
N.D.
N.D.
plant
Stem-Upstate
-0.3
-1.5
+0.1
N.D.
N.D.
plant
Stem-Norland
-0.1
-0.9
-0.2
N.D.
N.D.
plant
Stem-Atlantic
+0.1
-1.6
+0.3
N.D.
N.D.
plant
Stem-Norland
+0.1
-1.1
+0.0
N.D.
N.D.
plant
Stem-Atlantic
-0.2
-0.8
-0.0
N.D.
N.D.
plant
Stem-Atlantic
-0.2
-0.8
+0.2
N.D.
N.D.
plant
Stem-Upstate
+0.1
-1.0
+0.2
N.D.
N.D.
plant
Stem-Norland
+0.3
-1.1
-0.0
N.D.
N.D.
plant
Stem-Norland
+0.3
-1.2
+0.1
N.D.
N.D.
plant
Upstate
-0.2
-0.6
+0.1
N.D.
N.D.
plant
Stem-Norland
+0.2
-1.3
+0.3
N.D.
N.D.
plant
Upstate
+0.0
-0.6
-0.1
N.D.
N.D.
plant
Stem-Norland
-0.1
-0.5
-0.1
N.D.
N.D.
stress
3.75mM_PTB
-0.2
-0.1
-0.3
N.D.
N.D.
plant
Stem-Upstate
+0.1
-0.4
-0.1
N.D.
N.D.
plant
Stem-Atlantic
+0.2
-0.6
+0.1
N.D.
N.D.
plant
Stem-Norland
+0.2
-0.6
+0.2
N.D.
N.D.
control
LB
+0.3
-0.4
-0.0
N.D.
N.D.
plant
Stem-Atlantic
-0.0
-0.4
+0.2
N.D.
N.D.
control
LB
-0.2
+0.2
-0.2
N.D.
N.D.
plant
Stem-Upstate
+0.0
-0.6
+0.4
N.D.
N.D.
plant
Upstate
+0.2
-0.4
+0.1
N.D.
N.D.
plant
Stem-Norland
+0.0
-0.7
+0.7
N.D.
N.D.
plant
Atlantic
+0.0
-0.2
+0.3
N.D.
N.D.
plant
Stem-Upstate
+0.0
-0.3
+0.3
N.D.
N.D.
plant
Norland
+0.4
-0.2
-0.0
N.D.
N.D.
plant
Upstate
+0.3
-0.2
+0.1
N.D.
N.D.
carbon source
M9+starch
+0.1
+0.3
+0.1
N.D.
N.D.
carbon source
M9+glycerol
+0.4
+0.0
+0.1
N.D.
N.D.
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