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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola ME23
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DZA65_RS22240 and DZA65_RS22245 are separated by 22 nucleotides
DZA65_RS22245 and DZA65_RS22250 are separated by 41 nucleotides
DZA65_RS22250 and DZA65_RS22255 are separated by 109 nucleotides
DZA65_RS22255 and DZA65_RS22260 overlap by 8 nucleotides
DZA65_RS22240: DZA65_RS22240 - thiol:disulfide interchange protein DsbA, at 4,812,723 to 4,813,346
_RS22240
DZA65_RS22245: DZA65_RS22245 - serine/threonine protein kinase, at 4,813,369 to 4,814,355
_RS22245
DZA65_RS22250: DZA65_RS22250 - YihD family protein, at 4,814,397 to 4,814,666
_RS22250
DZA65_RS22255: DZA65_RS22255 - molybdenum cofactor guanylyltransferase MobA, at 4,814,776 to 4,815,351
_RS22255
DZA65_RS22260: DZA65_RS22260 - molybdopterin-guanine dinucleotide biosynthesis protein B, at 4,815,344 to 4,815,871
_RS22260
Group
Condition
DZA65
_RS22240
DZA65
_RS22245
DZA65
_RS22250
DZA65
_RS22255
DZA65
_RS22260
plant
Stem-Upstate
-2.6
+0.3
+0.0
-1.9
-0.3
plant
Stem-Upstate
-2.7
+0.3
-0.3
-1.5
+0.1
plant
Stem-Atlantic
-2.7
-0.0
+0.1
-1.6
+0.3
plant
Stem-Norland
-2.6
+0.1
-0.1
-0.9
-0.2
plant
Stem-Norland
-2.4
-0.2
+0.1
-1.1
+0.0
plant
Stem-Norland
-3.0
+0.0
-0.1
-0.5
-0.1
plant
Stem-Norland
-3.4
+0.1
+0.2
-0.6
+0.2
plant
Stem-Norland
-2.7
+0.1
+0.3
-1.2
+0.1
plant
Stem-Norland
-2.8
+0.3
+0.3
-1.1
-0.0
plant
Stem-Atlantic
-2.8
+0.1
+0.2
-0.6
+0.1
plant
Stem-Atlantic
-2.2
+0.1
-0.2
-0.8
-0.0
plant
Stem-Upstate
-2.9
+0.0
+0.0
-0.3
+0.3
plant
Stem-Atlantic
-2.0
+0.1
-0.2
-0.8
+0.2
plant
Stem-Atlantic
-2.5
+0.1
-0.2
-0.3
+0.1
plant
Stem-Upstate
-2.1
+0.5
+0.1
-1.0
+0.2
plant
Stem-Atlantic
-2.8
-0.0
+0.2
+0.1
+0.2
plant
Stem-Norland
-1.9
+0.2
+0.2
-1.3
+0.3
plant
Stem-Norland
-2.6
+0.2
+0.0
-0.7
+0.7
plant
Stem-Atlantic
-2.3
+0.2
-0.0
-0.4
+0.2
carbon source
M9+glycerol
-2.2
-0.0
-0.0
+0.2
-0.1
plant
Stem-Upstate
-2.0
+0.1
+0.0
-0.6
+0.4
carbon source
M9+glycerol
-2.2
-0.0
+0.1
+0.2
-0.0
plant
Upstate
-1.2
+0.1
-0.2
-0.6
+0.1
plant
Upstate
-1.1
-0.1
+0.0
-0.6
-0.1
carbon source
M9+polygalacturonate
-1.5
-0.1
-0.3
+0.0
+0.1
plant
Atlantic
-1.3
-0.2
-0.1
-0.1
+0.1
carbon source
M9+glycerol
-1.5
-0.1
-0.1
+0.1
+0.0
plant
Stem-Upstate
-1.0
+0.0
+0.1
-0.4
-0.1
plant
Stem-Upstate
-1.6
+0.1
+0.0
+0.0
+0.1
carbon source
M9+glycerol
+2.3
+0.2
+0.2
-0.1
+0.1
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DZA65_RS22250
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