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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola ME23
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DZA65_RS22155 and DZA65_RS22160 overlap by 1 nucleotides
DZA65_RS22160 and DZA65_RS22165 are separated by 181 nucleotides
DZA65_RS22165 and DZA65_RS22175 are separated by 281 nucleotides
DZA65_RS22175 and DZA65_RS22180 are separated by 64 nucleotides
DZA65_RS22155: DZA65_RS22155 - tRNA (guanosine(18)-2'-O)-methyltransferase TrmH, at 4,790,670 to 4,791,362
_RS22155
DZA65_RS22160: DZA65_RS22160 - ATP-dependent DNA helicase RecG, at 4,791,362 to 4,793,443
_RS22160
DZA65_RS22165: DZA65_RS22165 - uracil-xanthine permease, at 4,793,625 to 4,795,013
_RS22165
DZA65_RS22175: DZA65_RS22175 - AsmA family protein, at 4,795,295 to 4,797,040
_RS22175
DZA65_RS22180: DZA65_RS22180 - fatty acid biosynthesis protein FabY, at 4,797,105 to 4,798,046
_RS22180
Group
Condition
DZA65
_RS22155
DZA65
_RS22160
DZA65
_RS22165
DZA65
_RS22175
DZA65
_RS22180
control
PDB
-0.5
-1.2
+0.1
-0.1
+0.0
control
PDB
-0.2
-1.2
-0.0
-0.2
-0.0
carbon source
M9+sucrose
-0.1
-1.2
-0.0
-0.1
+0.0
plant
Stem-Norland
-0.3
-0.6
-0.0
-0.1
-0.5
carbon source
M9+sucrose
-0.0
-1.2
+0.1
-0.3
+0.1
carbon source
M9+sucrose
+0.0
-1.4
-0.1
-0.1
+0.3
carbon source
M9+polygalacturonate
-0.2
-0.7
-0.1
-0.2
+0.1
stress
3.75mM_PTB
-0.2
-0.3
-0.2
-0.2
-0.1
control
PDB
-0.2
-1.0
+0.1
+0.0
+0.0
control
LB
-0.6
-0.4
+0.0
-0.0
+0.1
plant
Stem-Atlantic
-0.3
-0.5
+0.3
-0.2
-0.3
plant
Stem-Upstate
-0.3
-0.6
+0.3
+0.2
-0.5
plant
Norland
+0.1
-0.4
+0.1
-0.1
-0.5
plant
Stem-Atlantic
-0.5
-0.4
+0.1
+0.2
-0.1
plant
Stem-Norland
-0.3
-0.3
+0.2
-0.1
-0.2
plant
Atlantic
+0.0
-0.4
+0.2
-0.1
-0.4
plant
Stem-Upstate
-0.4
-0.5
+0.5
+0.0
-0.3
plant
Stem-Norland
-0.3
-0.6
+0.4
+0.1
-0.1
plant
Stem-Atlantic
-0.4
-0.2
+0.2
+0.1
-0.2
carbon source
M9+polygalacturonate
+0.1
-0.6
+0.2
-0.1
+0.0
plant
Stem-Atlantic
-0.3
-0.4
+0.2
+0.1
-0.1
plant
Atlantic
-0.1
-0.5
+0.3
-0.0
+0.1
carbon source
M9+glycerol
-0.2
-0.4
+0.2
+0.3
-0.2
plant
Norland
+0.3
-0.3
+0.2
-0.3
-0.1
plant
Stem-Norland
+0.0
-0.5
+0.4
+0.0
-0.1
plant
Stem-Norland
-0.2
-0.6
+0.3
+0.1
+0.3
plant
Stem-Upstate
-0.3
-0.3
+0.7
+0.1
-0.3
plant
Stem-Upstate
+0.1
-0.4
+0.7
-0.2
+0.1
plant
Stem-Upstate
-0.2
-0.1
-0.2
-0.0
+0.7
plant
Stem-Norland
+0.5
-0.3
+0.2
+0.1
+0.2
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