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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola ME23
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DZA65_RS21955 and DZA65_RS21960 are separated by 298 nucleotides
DZA65_RS21960 and DZA65_RS21965 are separated by 123 nucleotides
DZA65_RS21965 and DZA65_RS21970 are separated by 407 nucleotides
DZA65_RS21970 and DZA65_RS21975 are separated by 236 nucleotides
DZA65_RS21955: DZA65_RS21955 - heat shock chaperone IbpA, at 4,748,811 to 4,749,224
_RS21955
DZA65_RS21960: DZA65_RS21960 - YceK/YidQ family lipoprotein, at 4,749,523 to 4,749,897
_RS21960
DZA65_RS21965: DZA65_RS21965 - MHS family MFS transporter, at 4,750,021 to 4,751,364
_RS21965
DZA65_RS21970: DZA65_RS21970 - biopolymer transporter Tol, at 4,751,772 to 4,751,990
_RS21970
DZA65_RS21975: DZA65_RS21975 - DUF1471 domain-containing protein, at 4,752,227 to 4,752,484
_RS21975
Group
Condition
DZA65
_RS21955
DZA65
_RS21960
DZA65
_RS21965
DZA65
_RS21970
DZA65
_RS21975
plant
Stem-Norland
-0.3
-0.4
-0.1
-0.2
+0.0
plant
Stem-Upstate
-0.4
-0.9
+0.1
+0.5
+0.0
plant
Stem-Norland
-0.4
-0.1
-0.2
+0.2
-0.0
control
PDB
-0.5
+0.2
-0.1
+0.1
-0.2
plant
Stem-Norland
-0.1
+0.1
+0.2
-0.1
-0.4
plant
Stem-Atlantic
-0.3
-0.2
-0.0
-0.1
+0.4
plant
Stem-Norland
-0.5
-0.1
+0.0
+0.3
+0.1
plant
Stem-Upstate
-0.1
-0.2
+0.2
+0.3
-0.4
plant
Stem-Upstate
-0.1
+0.4
-0.2
+0.4
-0.6
plant
Stem-Norland
-0.2
-0.2
+0.1
+0.3
-0.2
plant
Atlantic
-0.2
-0.2
+0.2
+0.1
+0.2
stress
1.88mM_PTB
-0.2
-0.1
+0.0
+0.3
-0.1
carbon source
M9+sucrose
-0.2
+0.0
-0.1
+0.4
-0.1
plant
Upstate
-0.2
-0.1
+0.0
+0.4
+0.1
plant
Stem-Atlantic
+0.1
-0.3
-0.1
+0.2
+0.3
plant
Stem-Atlantic
-0.2
+0.3
-0.0
+0.0
+0.1
carbon source
M9+sucrose
-0.2
+0.3
+0.0
+0.3
-0.2
carbon source
M9+polygalacturonate
-0.2
+0.2
-0.0
+0.2
+0.1
plant
Upstate
+0.1
-0.2
+0.0
+0.1
+0.3
control
LB
-0.1
-0.2
+0.1
+0.3
+0.3
control
LB
+0.1
-0.2
-0.1
+0.5
+0.1
control
PDB
-0.2
+0.1
+0.1
+0.1
+0.4
plant
Upstate
-0.0
+0.0
-0.1
+0.5
-0.1
control
LB
+0.2
-0.1
-0.1
+0.1
+0.2
plant
Upstate
-0.1
+0.2
+0.1
+0.1
+0.2
plant
Norland
+0.2
+0.1
-0.0
+0.2
+0.2
plant
Norland
-0.2
+0.2
-0.0
+0.3
+0.3
plant
Atlantic
+0.1
+0.0
-0.1
+0.4
+0.4
plant
Stem-Norland
-0.1
+0.0
+0.2
+0.3
+0.6
plant
Atlantic
+0.1
+0.4
+0.1
+0.1
+0.5
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