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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola ME23
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DZA65_RS21940 and DZA65_RS21950 are separated by 794 nucleotides
DZA65_RS21950 and DZA65_RS21955 are separated by 150 nucleotides
DZA65_RS21955 and DZA65_RS21960 are separated by 298 nucleotides
DZA65_RS21960 and DZA65_RS21965 are separated by 123 nucleotides
DZA65_RS21940: DZA65_RS21940 - anion permease, at 4,746,004 to 4,747,416
_RS21940
DZA65_RS21950: DZA65_RS21950 - heat shock chaperone IbpB, at 4,748,211 to 4,748,660
_RS21950
DZA65_RS21955: DZA65_RS21955 - heat shock chaperone IbpA, at 4,748,811 to 4,749,224
_RS21955
DZA65_RS21960: DZA65_RS21960 - YceK/YidQ family lipoprotein, at 4,749,523 to 4,749,897
_RS21960
DZA65_RS21965: DZA65_RS21965 - MHS family MFS transporter, at 4,750,021 to 4,751,364
_RS21965
Group
Condition
DZA65
_RS21940
DZA65
_RS21950
DZA65
_RS21955
DZA65
_RS21960
DZA65
_RS21965
plant
Stem-Upstate
+0.2
-0.3
-0.4
-0.9
+0.1
plant
Stem-Norland
+0.0
-0.3
-0.3
-0.4
-0.1
plant
Stem-Upstate
+0.2
-1.0
-0.1
-0.2
+0.2
plant
Stem-Atlantic
-0.2
-0.1
-0.3
-0.2
-0.0
plant
Stem-Norland
-0.0
-0.1
-0.4
-0.1
-0.2
plant
Stem-Norland
+0.1
-0.6
-0.2
-0.2
+0.1
control
PDB
-0.0
-0.1
-0.5
+0.2
-0.1
plant
Stem-Norland
+0.0
-0.6
-0.1
-0.1
+0.2
plant
Atlantic
+0.0
-0.5
+0.1
+0.0
-0.1
control
LB
-0.2
-0.1
+0.1
-0.2
-0.1
control
PDB
+0.0
-0.0
-0.3
+0.1
-0.2
plant
Stem-Atlantic
+0.2
-0.3
+0.1
-0.3
-0.1
plant
Atlantic
+0.1
-0.1
-0.2
-0.2
+0.2
plant
Stem-Norland
-0.2
+0.5
-0.5
-0.1
+0.0
stress
1.88mM_PTB
-0.2
+0.2
-0.2
-0.1
+0.0
plant
Norland
-0.3
+0.2
-0.3
+0.1
+0.0
plant
Norland
+0.1
-0.1
-0.2
-0.0
+0.1
carbon source
M9+sucrose
-0.0
-0.2
-0.2
+0.3
+0.0
plant
Upstate
-0.1
-0.2
-0.1
+0.2
+0.1
plant
Stem-Atlantic
+0.1
+0.2
-0.2
-0.2
+0.1
plant
Stem-Upstate
-0.1
+0.1
-0.1
+0.4
-0.2
stress
1.88mM_PTB
-0.3
+0.1
-0.1
+0.2
+0.1
plant
Atlantic
+0.2
-0.2
-0.1
+0.3
+0.0
plant
Stem-Atlantic
+0.3
-0.2
-0.2
+0.3
-0.0
carbon source
M9+starch
+0.3
+0.0
-0.2
+0.2
-0.1
carbon source
M9+glycerol
-0.2
+0.1
+0.1
+0.3
+0.1
plant
Stem-Norland
+0.2
+0.4
+0.2
-0.1
-0.2
plant
Stem-Upstate
-0.0
+0.5
+0.3
-0.1
+0.0
plant
Atlantic
+0.1
+0.0
+0.1
+0.4
+0.1
plant
Stem-Upstate
-0.0
+0.8
+0.0
-0.1
+0.1
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