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Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola ME23
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DZA65_RS21725 and DZA65_RS21730 overlap by 4 nucleotides
DZA65_RS21730 and DZA65_RS21735 overlap by 4 nucleotides
DZA65_RS21735 and DZA65_RS21740 are separated by 78 nucleotides
DZA65_RS21740 and DZA65_RS21745 are separated by 402 nucleotides
DZA65_RS21725: DZA65_RS21725 - high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF, at 4,698,887 to 4,700,365
_RS21725
DZA65_RS21730: DZA65_RS21730 - high-affinity branched-chain amino acid ABC transporter permease LivM, at 4,700,362 to 4,701,636
_RS21730
DZA65_RS21735: DZA65_RS21735 - high-affinity branched-chain amino acid ABC transporter permease LivH, at 4,701,633 to 4,702,559
_RS21735
DZA65_RS21740: DZA65_RS21740 - branched-chain amino acid ABC transporter substrate-binding protein, at 4,702,638 to 4,703,750
_RS21740
DZA65_RS21745: DZA65_RS21745 - aspartate 1-decarboxylase autocleavage activator PanM, at 4,704,153 to 4,704,572
_RS21745
Group
Condition
DZA65
_RS21725
DZA65
_RS21730
DZA65
_RS21735
DZA65
_RS21740
DZA65
_RS21745
carbon source
M9+polygalacturonate
-0.2
+0.0
+0.1
-0.0
-2.9
carbon source
M9+starch
-0.1
-0.1
-0.0
-0.1
-2.2
carbon source
M9+polygalacturonate
-0.2
-0.0
+0.1
+0.1
-2.2
carbon source
M9+sucrose
+0.0
-0.1
-0.0
-0.1
-1.9
carbon source
M9+polygalacturonate
-0.1
+0.0
-0.0
-0.1
-2.0
carbon source
M9+glycerol
-0.2
-0.1
-0.1
-0.1
-1.4
carbon source
M9+glycerol
-0.1
-0.0
-0.2
-0.0
-1.7
carbon source
M9+sucrose
+0.0
-0.1
-0.1
-0.2
-1.6
carbon source
M9+starch
+0.0
+0.0
+0.0
-0.1
-1.8
carbon source
M9+glycerol
-0.3
-0.2
+0.0
-0.0
-1.4
carbon source
M9+glycerol
-0.2
-0.1
+0.1
-0.2
-1.3
carbon source
M9+sucrose
-0.1
-0.1
-0.0
-0.0
-1.4
carbon source
M9+starch
-0.0
-0.0
-0.1
+0.0
-1.4
carbon source
M9+glycerol
-0.1
-0.0
-0.2
+0.0
-1.0
carbon source
M9+glycerol
-0.1
-0.2
-0.0
-0.1
-0.9
plant
Stem-Upstate
-0.1
-0.3
+0.0
-0.1
-0.6
control
PDB
-0.1
-0.0
-0.0
-0.1
-0.7
plant
Stem-Upstate
-0.3
+0.1
-0.0
-0.1
-0.5
plant
Stem-Upstate
-0.3
-0.1
-0.1
-0.0
-0.3
plant
Stem-Atlantic
-0.0
+0.1
-0.1
+0.1
-0.6
plant
Stem-Upstate
-0.3
-0.6
+0.3
+0.2
-0.1
plant
Upstate
+0.1
-0.1
+0.1
-0.1
-0.4
plant
Stem-Norland
-0.2
+0.1
-0.1
+0.3
-0.3
plant
Norland
-0.1
+0.2
+0.1
-0.1
-0.2
plant
Stem-Atlantic
-0.0
+0.1
-0.1
+0.3
-0.3
plant
Atlantic
-0.1
-0.0
+0.1
-0.1
+0.4
plant
Stem-Norland
+0.2
-0.0
+0.3
-0.1
-0.1
control
PDB
+0.1
+0.1
+0.2
-0.1
+0.3
plant
Stem-Norland
+0.2
+0.4
-0.1
-0.0
+0.3
plant
Stem-Norland
+0.3
+0.1
+0.4
+0.0
+0.3
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