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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola ME23
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DZA65_RS21075 and DZA65_RS21080 are separated by 369 nucleotides
DZA65_RS21080 and DZA65_RS21085 are separated by 86 nucleotides
DZA65_RS21085 and DZA65_RS21090 overlap by 1 nucleotides
DZA65_RS21090 and DZA65_RS21095 overlap by 4 nucleotides
DZA65_RS21075: DZA65_RS21075 - magnesium/cobalt transporter CorA, at 4,555,664 to 4,556,614
_RS21075
DZA65_RS21080: DZA65_RS21080 - DNA helicase II, at 4,556,984 to 4,559,146
_RS21080
DZA65_RS21085: DZA65_RS21085 - 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB, at 4,559,233 to 4,559,949
_RS21085
DZA65_RS21090: DZA65_RS21090 - tyrosine recombinase XerC, at 4,559,949 to 4,560,857
_RS21090
DZA65_RS21095: DZA65_RS21095 - DUF484 domain-containing protein, at 4,560,854 to 4,561,555
_RS21095
Group
Condition
DZA65
_RS21075
DZA65
_RS21080
DZA65
_RS21085
DZA65
_RS21090
DZA65
_RS21095
control
PDB
-1.1
-1.1
+0.1
-4.2
+0.1
plant
Norland
-1.2
-0.7
+0.1
-3.9
-0.5
plant
Stem-Upstate
-1.3
-1.1
-0.1
-1.8
-1.4
plant
Norland
-1.1
-0.4
-0.0
-3.6
-0.4
plant
Stem-Norland
-0.7
-1.3
+0.0
-2.1
-0.9
plant
Stem-Norland
-1.3
-0.9
+0.1
-1.8
-0.7
plant
Upstate
-1.0
-0.9
+0.1
-2.7
-0.2
plant
Stem-Atlantic
+0.3
-1.3
+0.1
-2.4
-1.1
plant
Stem-Atlantic
-0.1
-1.5
+0.0
-2.2
-0.5
plant
Upstate
-1.2
-0.5
+0.0
-2.4
-0.3
plant
Stem-Norland
-0.1
-1.3
-0.0
-2.2
-0.7
plant
Stem-Norland
-1.5
-1.5
+0.2
-1.1
-0.4
plant
Stem-Atlantic
-0.8
-1.6
+0.0
-1.0
-0.9
plant
Atlantic
-0.8
-0.7
+0.1
-2.0
-0.7
plant
Upstate
-1.5
-0.8
+0.1
-1.3
-0.6
control
LB
-0.6
-0.9
-0.0
-2.2
-0.4
plant
Stem-Norland
-0.8
-1.0
+0.0
-1.7
-0.6
plant
Stem-Atlantic
-0.5
-1.2
+0.1
-1.7
-0.6
plant
Atlantic
-0.4
-0.7
+0.2
-3.0
+0.0
control
PDB
-0.9
-0.8
+0.2
-2.2
-0.2
carbon source
M9+sucrose
-0.7
-0.4
-0.0
-2.4
-0.2
plant
Stem-Norland
-0.7
-1.0
+0.1
-0.8
-1.2
carbon source
M9+polygalacturonate
-0.6
-0.3
+0.0
-2.3
-0.3
carbon source
M9+polygalacturonate
-1.8
-0.2
+0.1
-1.2
-0.4
carbon source
M9+sucrose
-0.4
-0.6
+0.1
-2.2
-0.2
plant
Norland
-0.4
-0.7
+0.2
-2.1
-0.2
plant
Upstate
-0.6
-0.7
+0.1
-2.1
+0.1
plant
Stem-Atlantic
+0.8
-1.5
-0.2
-1.2
-1.2
control
LB
+0.3
-1.2
+0.2
-1.9
+0.1
plant
Stem-Norland
+0.9
-0.7
+0.3
-1.2
-1.3
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