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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola ME23
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DZA65_RS21005 and DZA65_RS21010 overlap by 4 nucleotides
DZA65_RS21010 and DZA65_RS21015 overlap by 11 nucleotides
DZA65_RS21015 and DZA65_RS21020 are separated by 300 nucleotides
DZA65_RS21020 and DZA65_RS21025 are separated by 192 nucleotides
DZA65_RS21005: DZA65_RS21005 - anaerobic glycerol-3-phosphate dehydrogenase subunit C, at 4,541,384 to 4,542,586
_RS21005
DZA65_RS21010: DZA65_RS21010 - glycerol-3-phosphate dehydrogenase subunit GlpB, at 4,542,583 to 4,543,833
_RS21010
DZA65_RS21015: DZA65_RS21015 - anaerobic glycerol-3-phosphate dehydrogenase subunit A, at 4,543,823 to 4,545,466
_RS21015
DZA65_RS21020: DZA65_RS21020 - glycerol-3-phosphate transporter, at 4,545,767 to 4,547,116
_RS21020
DZA65_RS21025: DZA65_RS21025 - sugar/pyridoxal phosphate phosphatase YigL, at 4,547,309 to 4,548,118
_RS21025
Group
Condition
DZA65
_RS21005
DZA65
_RS21010
DZA65
_RS21015
DZA65
_RS21020
DZA65
_RS21025
plant
Upstate
-0.0
+0.1
-0.3
-0.1
-0.4
plant
Stem-Upstate
-0.2
-0.3
+0.1
-0.1
-0.1
plant
Upstate
+0.1
-0.3
-0.0
-0.2
-0.1
carbon source
M9+glycerol
+0.0
-0.2
-0.1
+0.0
-0.3
plant
Upstate
+0.0
-0.4
-0.2
+0.1
-0.0
plant
Stem-Upstate
-0.0
+0.4
-0.2
-0.2
-0.4
carbon source
M9+polygalacturonate
-0.2
-0.2
+0.1
+0.0
-0.2
plant
Stem-Upstate
-0.2
+0.1
+0.1
-0.0
-0.4
plant
Atlantic
+0.0
-0.1
+0.1
-0.4
-0.0
plant
Stem-Norland
-0.2
-0.1
+0.2
-0.0
-0.2
plant
Upstate
-0.1
+0.2
-0.3
-0.1
+0.1
carbon source
M9+sucrose
-0.2
-0.3
+0.0
+0.0
+0.2
plant
Norland
+0.0
-0.4
+0.2
+0.1
+0.0
carbon source
M9+polygalacturonate
-0.1
-0.2
+0.3
+0.2
-0.2
stress
3.75mM_PTB
+0.3
+0.0
-0.1
-0.1
-0.1
control
LB
+0.1
+0.2
-0.3
+0.1
-0.1
plant
Stem-Upstate
+0.0
-0.2
+0.4
-0.0
-0.0
plant
Stem-Upstate
+0.1
+0.3
+0.0
+0.1
-0.3
plant
Stem-Norland
-0.0
+0.5
+0.1
-0.2
-0.2
plant
Stem-Atlantic
+0.1
-0.1
+0.3
+0.1
-0.2
plant
Stem-Norland
+0.2
+0.1
+0.2
+0.1
-0.4
control
LB
+0.1
-0.1
-0.1
+0.1
+0.3
plant
Stem-Upstate
+0.1
+0.4
-0.1
-0.0
-0.0
plant
Stem-Atlantic
-0.2
+0.3
-0.0
+0.2
+0.0
plant
Stem-Upstate
-0.2
+0.4
+0.2
-0.1
+0.1
plant
Stem-Atlantic
+0.1
+0.5
-0.1
+0.1
-0.1
control
PDB
-0.0
+0.4
+0.0
-0.0
+0.2
plant
Stem-Norland
+0.1
+0.4
+0.1
+0.3
-0.2
carbon source
M9+starch
+0.1
+0.1
+0.2
-0.1
+0.4
plant
Stem-Norland
+0.1
+0.6
+0.2
+0.5
+0.2
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