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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola ME23
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DZA65_RS20865 and DZA65_RS20870 are separated by 79 nucleotides
DZA65_RS20870 and DZA65_RS20875 are separated by 56 nucleotides
DZA65_RS20875 and DZA65_RS20880 are separated by 134 nucleotides
DZA65_RS20880 and DZA65_RS20885 are separated by 12 nucleotides
DZA65_RS20865: DZA65_RS20865 - pimeloyl-ACP methyl ester esterase BioH, at 4,505,019 to 4,505,786
_RS20865
DZA65_RS20870: DZA65_RS20870 - DNA utilization protein GntX, at 4,505,866 to 4,506,585
_RS20870
DZA65_RS20875: DZA65_RS20875 - Fe-S biogenesis protein NfuA, at 4,506,642 to 4,507,217
_RS20875
DZA65_RS20880: DZA65_RS20880 - 4-alpha-glucanotransferase, at 4,507,352 to 4,509,514
_RS20880
DZA65_RS20885: DZA65_RS20885 - maltodextrin phosphorylase, at 4,509,527 to 4,511,950
_RS20885
Group
Condition
DZA65
_RS20865
DZA65
_RS20870
DZA65
_RS20875
DZA65
_RS20880
DZA65
_RS20885
plant
Stem-Norland
-0.3
-0.3
-3.3
-0.8
-0.3
plant
Stem-Norland
-2.2
-0.8
-0.6
-0.6
-0.0
plant
Stem-Upstate
-0.3
-1.0
-1.3
-1.3
-0.3
plant
Stem-Upstate
+1.5
-2.6
-1.4
-0.8
-0.3
plant
Stem-Upstate
-0.3
+0.1
-2.3
-0.3
-0.3
plant
Stem-Atlantic
-0.8
+0.0
-2.0
+0.3
-0.0
plant
Stem-Norland
-0.1
-0.9
-0.2
-0.7
-0.3
plant
Stem-Atlantic
-0.2
+0.3
-3.1
+0.8
+0.0
plant
Stem-Norland
+0.1
-0.3
-1.0
-0.6
-0.3
plant
Stem-Norland
-0.1
+0.4
-2.0
-0.1
-0.3
plant
Stem-Upstate
-0.4
-1.0
-0.8
+0.2
+0.2
plant
Stem-Atlantic
-0.4
+0.3
-1.4
-0.2
+0.0
plant
Atlantic
-0.5
-0.6
-1.0
+0.2
+0.2
carbon source
M9+glycerol
+0.4
-0.1
-1.8
-0.1
+0.1
plant
Stem-Norland
-0.3
+1.1
-1.7
+0.0
-0.0
plant
Stem-Atlantic
+0.6
+0.1
-0.9
-0.5
-0.2
plant
Stem-Atlantic
-0.6
-0.1
-0.7
+0.6
+0.3
plant
Stem-Upstate
+1.2
+1.2
-2.2
-0.7
-0.1
control
LB
+0.8
+0.3
-1.4
-0.1
+0.0
plant
Stem-Atlantic
+0.2
+0.7
-1.6
+0.2
+0.1
carbon source
M9+polygalacturonate
+0.3
+0.6
-1.6
+0.4
+0.1
carbon source
M9+polygalacturonate
+0.5
+0.2
-1.4
+0.2
+0.3
stress
1.88mM_PTB
+1.1
-0.5
-0.6
-0.1
-0.1
carbon source
M9+polygalacturonate
+0.7
+0.6
-1.7
+0.3
+0.0
stress
3.75mM_PTB
+0.9
-0.9
+0.4
-0.1
-0.1
plant
Norland
-0.6
+1.0
-0.5
+0.2
+0.2
plant
Upstate
+0.7
-0.7
-0.3
+0.5
+0.2
carbon source
M9+sucrose
+1.1
+0.7
-0.8
-0.5
+0.1
plant
Stem-Upstate
+0.4
+2.0
-1.9
+0.1
-0.1
control
LB
+0.6
+1.0
-0.6
+0.1
-0.0
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