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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola ME23
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DZA65_RS20775 and DZA65_RS20780 overlap by 1 nucleotides
DZA65_RS20780 and DZA65_RS20785 overlap by 1 nucleotides
DZA65_RS20785 and DZA65_RS20790 overlap by 7 nucleotides
DZA65_RS20790 and DZA65_RS20795 are separated by 102 nucleotides
DZA65_RS20775: DZA65_RS20775 - DUF2531 family protein, at 4,482,728 to 4,483,084
_RS20775
DZA65_RS20780: DZA65_RS20780 - hypothetical protein, at 4,483,084 to 4,483,632
_RS20780
DZA65_RS20785: DZA65_RS20785 - PilN domain-containing protein, at 4,483,632 to 4,484,192
_RS20785
DZA65_RS20790: DZA65_RS20790 - pilus assembly protein PilM, at 4,484,186 to 4,485,079
_RS20790
DZA65_RS20795: DZA65_RS20795 - peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA, at 4,485,182 to 4,487,740
_RS20795
Group
Condition
DZA65
_RS20775
DZA65
_RS20780
DZA65
_RS20785
DZA65
_RS20790
DZA65
_RS20795
control
LB
-3.4
+0.0
-0.3
-0.1
-0.4
plant
Stem-Atlantic
-3.2
+0.1
+0.1
-0.2
-0.5
plant
Stem-Atlantic
-2.0
-0.2
-0.2
+0.0
-0.2
control
PDB
-1.4
+0.2
+0.1
-0.0
-0.6
control
PDB
-1.1
+0.1
-0.1
+0.0
-0.5
control
PDB
-0.5
+0.0
-0.3
-0.1
-0.7
plant
Stem-Norland
-0.3
-0.6
+0.2
-0.1
-0.7
plant
Stem-Norland
-1.2
+0.3
+0.1
-0.1
-0.6
plant
Stem-Upstate
+0.0
-0.5
+0.1
+0.1
-1.1
plant
Atlantic
-1.0
-0.1
-0.0
+0.0
-0.3
plant
Stem-Norland
-0.5
+0.0
-0.0
-0.0
-0.8
plant
Stem-Norland
-1.0
-0.2
-0.0
+0.1
-0.2
plant
Stem-Norland
-0.2
-0.1
-0.2
-0.1
-0.7
plant
Stem-Atlantic
-1.1
+0.0
+0.1
-0.2
+0.2
control
PDB
-0.9
+0.1
+0.2
+0.0
-0.4
plant
Upstate
-1.0
+0.1
+0.1
-0.0
-0.2
plant
Stem-Norland
+0.3
-0.5
-0.1
-0.2
-0.6
plant
Atlantic
-1.0
+0.2
-0.0
+0.1
-0.3
control
LB
-0.9
+0.1
-0.2
-0.1
+0.2
plant
Stem-Upstate
+0.4
+0.2
-0.0
-0.0
-0.8
carbon source
M9+sucrose
+0.6
-0.1
-0.0
-0.0
-0.6
carbon source
M9+polygalacturonate
+0.8
-0.0
-0.2
-0.0
-0.5
carbon source
M9+sucrose
+0.7
+0.1
+0.3
-0.1
-0.6
carbon source
M9+sucrose
+1.0
-0.2
-0.1
+0.2
-0.4
plant
Stem-Norland
+1.3
+0.1
+0.1
-0.1
-0.5
plant
Stem-Upstate
+0.9
-0.0
+0.4
-0.1
-0.3
carbon source
M9+glycerol
+0.0
-0.1
-0.2
+0.0
+1.1
carbon source
M9+starch
+1.7
+0.0
-0.1
-0.0
-0.2
carbon source
M9+starch
+1.3
+0.4
-0.2
+0.1
+0.0
plant
Stem-Upstate
-0.2
+1.0
+1.1
+0.3
-0.1
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