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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola ME23
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DZA65_RS20180 and DZA65_RS20185 overlap by 8 nucleotides
DZA65_RS20185 and DZA65_RS20190 are separated by 12 nucleotides
DZA65_RS20190 and DZA65_RS20195 are separated by 14 nucleotides
DZA65_RS20195 and DZA65_RS20200 are separated by 351 nucleotides
DZA65_RS20180: DZA65_RS20180 - fumarate reductase (quinol) flavoprotein subunit, at 4,372,882 to 4,374,678
_RS20180
DZA65_RS20185: DZA65_RS20185 - succinate dehydrogenase/fumarate reductase iron-sulfur subunit, at 4,374,671 to 4,375,405
_RS20185
DZA65_RS20190: DZA65_RS20190 - fumarate reductase subunit FrdC, at 4,375,418 to 4,375,813
_RS20190
DZA65_RS20195: DZA65_RS20195 - fumarate reductase subunit FrdD, at 4,375,828 to 4,376,184
_RS20195
DZA65_RS20200: DZA65_RS20200 - DMT family protein, at 4,376,536 to 4,376,889
_RS20200
Group
Condition
DZA65
_RS20180
DZA65
_RS20185
DZA65
_RS20190
DZA65
_RS20195
DZA65
_RS20200
plant
Upstate
-0.4
-0.4
-0.3
-0.5
+0.0
plant
Upstate
-0.2
-0.3
-0.4
-0.5
-0.2
plant
Atlantic
-0.2
-0.2
-0.5
-0.4
+0.2
plant
Norland
-0.3
-0.3
-0.3
-0.6
+0.3
plant
Atlantic
-0.2
-0.1
-0.2
-0.4
-0.3
plant
Norland
-0.4
-0.6
-0.2
-0.1
+0.2
plant
Norland
-0.0
-0.3
-0.2
-0.6
+0.0
plant
Upstate
-0.2
-0.4
-0.1
-0.3
+0.0
plant
Norland
-0.3
-0.4
-0.3
-0.0
-0.1
plant
Atlantic
-0.4
-0.4
-0.0
-0.2
-0.0
plant
Stem-Norland
-0.4
+0.2
-0.2
-0.4
-0.1
plant
Upstate
-0.3
-0.6
-0.3
+0.2
+0.1
plant
Atlantic
-0.1
+0.1
-0.2
-0.8
+0.1
control
LB
-0.1
-0.0
-0.3
-0.5
+0.3
stress
1.88mM_PTB
-0.0
+0.0
+0.1
-0.8
+0.1
plant
Stem-Upstate
+0.1
-0.5
-0.1
-0.3
+0.4
plant
Upstate
-0.2
-0.1
-0.3
+0.3
+0.0
control
LB
+0.2
+0.2
-0.0
-0.3
+0.3
plant
Stem-Upstate
+0.6
+0.1
-0.5
+0.3
-0.1
plant
Stem-Atlantic
+0.0
+0.4
+0.4
-0.4
+0.1
plant
Stem-Upstate
+0.3
+0.1
+0.8
-0.5
-0.1
plant
Stem-Norland
+0.2
+0.2
-0.3
+0.6
+0.0
plant
Stem-Atlantic
+0.0
+0.2
+0.3
+0.4
-0.2
plant
Stem-Upstate
+0.0
+0.3
+0.7
+0.2
-0.5
plant
Stem-Norland
+0.0
+0.4
+0.4
-0.2
+0.2
plant
Stem-Norland
+0.1
-0.1
+0.1
+0.8
+0.2
plant
Stem-Atlantic
+0.0
+0.3
+0.1
+0.6
+0.0
plant
Stem-Upstate
+0.1
+0.3
+1.0
-0.2
-0.2
carbon source
M9+sucrose
+0.2
+0.3
+0.4
+0.2
-0.0
plant
Stem-Atlantic
+0.2
+0.4
+0.2
+0.2
+0.4
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